Human Gene GRK6 (ENST00000355472.10_6) from GENCODE V47lift37
  Description: G protein-coupled receptor kinase 6, transcript variant 4 (from RefSeq NM_001364164.2)
Gencode Transcript: ENST00000355472.10_6
Gencode Gene: ENSG00000198055.11_11
Transcript (Including UTRs)
   Position: hg19 chr5:176,853,677-176,869,892 Size: 16,216 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr5:176,853,847-176,868,791 Size: 14,945 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:176,853,677-176,869,892)mRNA (may differ from genome)Protein (576 aa)
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-  Comments and Description Text from UniProtKB
  ID: GRK6_HUMAN
DESCRIPTION: RecName: Full=G protein-coupled receptor kinase 6; EC=2.7.11.16; AltName: Full=G protein-coupled receptor kinase GRK6;
FUNCTION: Specifically phosphorylates the activated forms of G protein-coupled receptors. Such receptor phosphorylation initiates beta-arrestin-mediated receptor desensitization, internalization, and signaling events leading to their desensitization. Seems to be involved in the desensitization of D2-like dopamin receptors in striatum and chemokine receptor CXCR4 which is critical for CXCL12-induced cell chemotaxis (By similarity). Phosphorylates rhodopsin (RHO) (in vitro) and a non G-protein-coupled receptor: LRP6 during Wnt signaling (in vitro).
CATALYTIC ACTIVITY: ATP + [G-protein-coupled receptor] = ADP + [G- protein-coupled receptor] phosphate.
SUBCELLULAR LOCATION: Membrane; Lipid-anchor.
TISSUE SPECIFICITY: Widely expressed.
PTM: It is uncertain whether palmitoylation is on Cys-561 and/or Cys-562 and/or Cys-565.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 RGS domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 69.28 RPKM in Whole Blood
Total median expression: 523.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -105.90170-0.623 Picture PostScript Text
3' UTR -463.401101-0.421 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR000239 - GPCR_kinase
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR000342 - Regulat_G_prot_signal
IPR016137 - Regulat_G_prot_signal_superfam
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00615 - Regulator of G protein signaling domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
48097 - Regulator of G-protein signaling, RGS
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2ACX - X-ray MuPIT 3NYN - X-ray MuPIT 3NYO - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P43250
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004703 G-protein coupled receptor kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0047696 beta-adrenergic receptor kinase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC009277 - Homo sapiens G protein-coupled receptor kinase 6, mRNA (cDNA clone MGC:10490 IMAGE:4053197), complete cds.
L16862 - Homo sapiens G protein-coupled receptor kinase (GRK6) mRNA, complete cds.
BC017272 - Homo sapiens G protein-coupled receptor kinase 6, mRNA (cDNA clone MGC:29578 IMAGE:4640283), complete cds.
JD076413 - Sequence 57437 from Patent EP1572962.
CU677893 - Synthetic construct Homo sapiens gateway clone IMAGE:100019918 5' read GRK6 mRNA.
CU679285 - Synthetic construct Homo sapiens gateway clone IMAGE:100022462 5' read GRK6 mRNA.
AF040752 - Homo sapiens G protein-coupled receptor kinase 6, splice variant C (GRK6) mRNA, complete cds.
KJ891288 - Synthetic construct Homo sapiens clone ccsbBroadEn_00682 GRK6 gene, encodes complete protein.
JF432223 - Synthetic construct Homo sapiens clone IMAGE:100073387 G protein-coupled receptor kinase 6 (GRK6) gene, encodes complete protein.
KJ896928 - Synthetic construct Homo sapiens clone ccsbBroadEn_06322 GRK6 gene, encodes complete protein.
KJ905206 - Synthetic construct Homo sapiens clone ccsbBroadEn_14658 GRK6 gene, encodes complete protein.
AF040751 - Homo sapiens G protein-coupled receptor kinase 6, splice variant B (GRK6) mRNA, complete cds.
AB527614 - Synthetic construct DNA, clone: pF1KB9908, Homo sapiens GRK6 gene for G protein-coupled receptor kinase 6, without stop codon, in Flexi system.
AK056697 - Homo sapiens cDNA FLJ32135 fis, clone PEBLM2000333, highly similar to G protein-coupled receptor kinase 6 (EC 2.7.11.16).
JD191824 - Sequence 172848 from Patent EP1572962.
JD362619 - Sequence 343643 from Patent EP1572962.
JD565522 - Sequence 546546 from Patent EP1572962.
JD214829 - Sequence 195853 from Patent EP1572962.
JD165319 - Sequence 146343 from Patent EP1572962.
JD484430 - Sequence 465454 from Patent EP1572962.
JD269248 - Sequence 250272 from Patent EP1572962.
JD478943 - Sequence 459967 from Patent EP1572962.
JD449864 - Sequence 430888 from Patent EP1572962.
JD479524 - Sequence 460548 from Patent EP1572962.
JD533610 - Sequence 514634 from Patent EP1572962.
JD282392 - Sequence 263416 from Patent EP1572962.
JD272480 - Sequence 253504 from Patent EP1572962.
JD345084 - Sequence 326108 from Patent EP1572962.
JD322304 - Sequence 303328 from Patent EP1572962.
JD120470 - Sequence 101494 from Patent EP1572962.
JD193442 - Sequence 174466 from Patent EP1572962.
JD241894 - Sequence 222918 from Patent EP1572962.
JD458926 - Sequence 439950 from Patent EP1572962.
JD369322 - Sequence 350346 from Patent EP1572962.
JD252009 - Sequence 233033 from Patent EP1572962.
JD227183 - Sequence 208207 from Patent EP1572962.
JD134664 - Sequence 115688 from Patent EP1572962.
JD307450 - Sequence 288474 from Patent EP1572962.
JD086165 - Sequence 67189 from Patent EP1572962.
JD347662 - Sequence 328686 from Patent EP1572962.
JD549537 - Sequence 530561 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P43250 (Reactome details) participates in the following event(s):

R-HSA-8982645 GRKs bind ADRB2:Catecholamine
R-HSA-8982641 ADRB2:GRK complex dissociates to Phosphorylated ADRB2
R-HSA-8851797 ADRB2 in ADRB2:GRK complex is phosphorylated
R-HSA-418555 G alpha (s) signalling events
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000355472.1, ENST00000355472.2, ENST00000355472.3, ENST00000355472.4, ENST00000355472.5, ENST00000355472.6, ENST00000355472.7, ENST00000355472.8, ENST00000355472.9, GPRK6, GRK6_HUMAN, NM_001364164, O60541, P43250, Q13652, uc317zcb.1, uc317zcb.2
UCSC ID: ENST00000355472.10_6
RefSeq Accession: NM_001004106.3
Protein: P43250 (aka GRK6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.