Human Gene GSK3A (ENST00000222330.8_10) from GENCODE V47lift37
  Description: glycogen synthase kinase 3 alpha (from RefSeq NM_019884.3)
Gencode Transcript: ENST00000222330.8_10
Gencode Gene: ENSG00000105723.13_19
Transcript (Including UTRs)
   Position: hg19 chr19:42,734,342-42,746,754 Size: 12,413 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr19:42,734,946-42,746,617 Size: 11,672 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:42,734,342-42,746,754)mRNA (may differ from genome)Protein (483 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GSK3A_HUMAN
DESCRIPTION: RecName: Full=Glycogen synthase kinase-3 alpha; Short=GSK-3 alpha; EC=2.7.11.26; AltName: Full=Serine/threonine-protein kinase GSK3A; EC=2.7.11.1;
FUNCTION: Constitutively active protein kinase that acts as a negative regulator in the hormonal control of glucose homeostasis, Wnt signaling and regulation of transctiption factors and microtubules, by phosphorylating and inactivating glycogen synthase (GYS1 or GYS2), CTNNB1/beta-catenin, APC and AXIN1. Requires primed phosphorylation of the majority of its substrates. Contributes to insulin regulation of glycogen synthesis by phosphorylating and inhibiting GYS1 activity and hence glycogen synthesis. Regulates glycogen metabolism in liver, but not in muscle. May also mediate the development of insulin resistance by regulating activation of transcription factors. In Wnt signaling, regulates the level and transcriptional activity of nuclear CTNNB1/beta-catenin. Facilitates amyloid precursor protein (APP) processing and the generation of APP-derived amyloid plaques found in Alzheimer disease. May be involved in the regulation of replication in pancreatic beta-cells. Is necessary for the establishment of neuronal polarity and axon outgrowth.
CATALYTIC ACTIVITY: ATP + [tau protein] = ADP + [tau protein] phosphate.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated by phosphorylation at Tyr-279. In response to insulin, inhibited by phosphorylation at Ser-21 by PKB/AKT1; phosphorylation at this site causes a conformational change, preventing access of substrates to the active site. Inhibited by lithium.
SUBUNIT: Monomer. Interacts with ARRB2 (By similarity). Interacts with AXIN1 and CTNNB1/beta-catenin.
INTERACTION: O75398:DEAF1; NbExp=2; IntAct=EBI-1044067, EBI-718185;
PTM: Phosphorylated by AKT1 at Ser-21: upon insulin-mediated signaling, the activated PKB/AKT1 protein kinase phosphorylates and desactivates GSK3A, resulting in the dephosphorylation and activation of GYS1. Activated by phosphorylation at Tyr-279.
MISCELLANEOUS: Higher expression and activity of GSK3A are found in the skeletal muscle (vastus lateralis) of patients with type 2 diabetes (PubMed:10868943). Several potent GSK3 (GSK3A and GSK3B) inhibitors have been identified and characterized in preclinical models for treatments of type 2 diabetes (PubMed:19366350).
SIMILARITY: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. GSK-3 subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GSK3A
Diseases sorted by gene-association score: alzheimer disease (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 76.09 RPKM in Brain - Cortex
Total median expression: 1776.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -79.50137-0.580 Picture PostScript Text
3' UTR -216.00604-0.358 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DFM - Model


ModBase Predicted Comparative 3D Structure on P49840
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0034236 protein kinase A catalytic subunit binding
GO:0050321 tau-protein kinase activity

Biological Process:
GO:0003073 regulation of systemic arterial blood pressure
GO:0003214 cardiac left ventricle morphogenesis
GO:0005975 carbohydrate metabolic process
GO:0005977 glycogen metabolic process
GO:0006349 regulation of gene expression by genetic imprinting
GO:0006468 protein phosphorylation
GO:0007212 dopamine receptor signaling pathway
GO:0007399 nervous system development
GO:0007568 aging
GO:0008286 insulin receptor signaling pathway
GO:0009968 negative regulation of signal transduction
GO:0010628 positive regulation of gene expression
GO:0010800 positive regulation of peptidyl-threonine phosphorylation
GO:0010905 negative regulation of UDP-glucose catabolic process
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0031398 positive regulation of protein ubiquitination
GO:0032007 negative regulation of TOR signaling
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032869 cellular response to insulin stimulus
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0036016 cellular response to interleukin-3
GO:0036498 IRE1-mediated unfolded protein response
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043525 positive regulation of neuron apoptotic process
GO:0044027 hypermethylation of CpG island
GO:0045719 negative regulation of glycogen biosynthetic process
GO:0045732 positive regulation of protein catabolic process
GO:0045823 positive regulation of heart contraction
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046325 negative regulation of glucose import
GO:0046627 negative regulation of insulin receptor signaling pathway
GO:0060079 excitatory postsynaptic potential
GO:0061052 negative regulation of cell growth involved in cardiac muscle cell development
GO:0071285 cellular response to lithium ion
GO:0071407 cellular response to organic cyclic compound
GO:0071879 positive regulation of adrenergic receptor signaling pathway
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0097191 extrinsic apoptotic signaling pathway
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand
GO:1901030 positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902004 positive regulation of beta-amyloid formation
GO:1903146 regulation of mitophagy
GO:1903955 positive regulation of protein targeting to mitochondrion
GO:1904227 negative regulation of glycogen synthase activity, transferring glucose-1-phosphate
GO:2000077 negative regulation of type B pancreatic cell development
GO:2000171 negative regulation of dendrite development
GO:2000466 negative regulation of glycogen (starch) synthase activity
GO:2000467 positive regulation of glycogen (starch) synthase activity

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0005874 microtubule
GO:0030877 beta-catenin destruction complex
GO:0043025 neuronal cell body
GO:0097440 apical dendrite
GO:0098794 postsynapse
GO:1990635 proximal dendrite


-  Descriptions from all associated GenBank mRNAs
  D63424 - Homo sapiens mRNA for glycogen synthase kinase 3alpha, complete cds.
BC051865 - Homo sapiens glycogen synthase kinase 3 alpha, mRNA (cDNA clone MGC:60234 IMAGE:6171438), complete cds.
L40027 - Homo sapiens glycogen synthase kinase 3 mRNA, complete cds.
BC027984 - Homo sapiens glycogen synthase kinase 3 alpha, mRNA (cDNA clone MGC:40141 IMAGE:3903896), complete cds.
CR749620 - Homo sapiens mRNA; cDNA DKFZp686D0638 (from clone DKFZp686D0638).
JD124366 - Sequence 105390 from Patent EP1572962.
JD127216 - Sequence 108240 from Patent EP1572962.
JD387510 - Sequence 368534 from Patent EP1572962.
JD126161 - Sequence 107185 from Patent EP1572962.
JD329380 - Sequence 310404 from Patent EP1572962.
JD132255 - Sequence 113279 from Patent EP1572962.
JD386920 - Sequence 367944 from Patent EP1572962.
JD397669 - Sequence 378693 from Patent EP1572962.
JD389454 - Sequence 370478 from Patent EP1572962.
JD394270 - Sequence 375294 from Patent EP1572962.
JD391374 - Sequence 372398 from Patent EP1572962.
JD126686 - Sequence 107710 from Patent EP1572962.
JD519305 - Sequence 500329 from Patent EP1572962.
JD385014 - Sequence 366038 from Patent EP1572962.
JD173875 - Sequence 154899 from Patent EP1572962.
JD349092 - Sequence 330116 from Patent EP1572962.
JD163431 - Sequence 144455 from Patent EP1572962.
JD130355 - Sequence 111379 from Patent EP1572962.
KJ905208 - Synthetic construct Homo sapiens clone ccsbBroadEn_14660 GSK3A gene, encodes complete protein.
DQ891014 - Synthetic construct clone IMAGE:100003644; FLH168532.01X; RZPDo839A0594D glycogen synthase kinase 3 alpha (GSK3A) gene, encodes complete protein.
DQ893329 - Synthetic construct clone IMAGE:100005959; FLH196230.01X; RZPDo839F12154D glycogen synthase kinase 3 alpha (GSK3A) gene, encodes complete protein.
DQ894195 - Synthetic construct Homo sapiens clone IMAGE:100008655; FLH168528.01L; RZPDo839A0593D glycogen synthase kinase 3 alpha (GSK3A) gene, encodes complete protein.
DQ896624 - Synthetic construct Homo sapiens clone IMAGE:100011084; FLH196226.01L; RZPDo839F12153D glycogen synthase kinase 3 alpha (GSK3A) gene, encodes complete protein.
JD124628 - Sequence 105652 from Patent EP1572962.
JD191194 - Sequence 172218 from Patent EP1572962.
DL491992 - Novel nucleic acids.
JD192118 - Sequence 173142 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_ptdinsPathway - Phosphoinositides and their downstream targets.

Reactome (by CSHL, EBI, and GO)

Protein P49840 (Reactome details) participates in the following event(s):

R-HSA-198371 AKT phosphorylates GSK3
R-HSA-2399966 AKT1 E17K mutant phosphorylates GSK3
R-HSA-381038 XBP1(S) activates chaperone genes
R-HSA-198323 AKT phosphorylates targets in the cytosol
R-HSA-5674400 Constitutive Signaling by AKT1 E17K in Cancer
R-HSA-381070 IRE1alpha activates chaperones
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-5663202 Diseases of signal transduction
R-HSA-392499 Metabolism of proteins
R-HSA-162582 Signal Transduction
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000222330.1, ENST00000222330.2, ENST00000222330.3, ENST00000222330.4, ENST00000222330.5, ENST00000222330.6, ENST00000222330.7, GSK3A_HUMAN, NM_019884, O14959, P49840, uc317del.1, uc317del.2
UCSC ID: ENST00000222330.8_10
RefSeq Accession: NM_019884.3
Protein: P49840 (aka GSK3A_HUMAN or KG3A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.