Human Gene HAGH (ENST00000397356.8_9) from GENCODE V47lift37
  Description: hydroxyacylglutathione hydrolase, transcript variant 1 (from RefSeq NM_005326.6)
Gencode Transcript: ENST00000397356.8_9
Gencode Gene: ENSG00000063854.13_13
Transcript (Including UTRs)
   Position: hg19 chr16:1,857,630-1,876,826 Size: 19,197 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr16:1,859,284-1,876,788 Size: 17,505 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:1,857,630-1,876,826)mRNA (may differ from genome)Protein (308 aa)
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-  Comments and Description Text from UniProtKB
  ID: GLO2_HUMAN
DESCRIPTION: RecName: Full=Hydroxyacylglutathione hydrolase, mitochondrial; EC=3.1.2.6; AltName: Full=Glyoxalase II; Short=Glx II; Flags: Precursor;
FUNCTION: Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid.
CATALYTIC ACTIVITY: S-(2-hydroxyacyl)glutathione + H(2)O = glutathione + a 2-hydroxy carboxylate.
COFACTOR: Binds 2 zinc ions per subunit.
PATHWAY: Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 2/2.
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Isoform 1: Mitochondrion matrix.
SUBCELLULAR LOCATION: Isoform 2: Cytoplasm.
TISSUE SPECIFICITY: Expressed in liver and kidney.
SIMILARITY: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family.
CAUTION: Only one single gene encoding glyoxalase II has been identified in vertebrates. In yeast and higher plants, separate genes encode the cytosolic and mitochondrial forms of glyoxalase II.
SEQUENCE CAUTION: Sequence=AAH00840.1; Type=Erroneous initiation; Sequence=CAA62483.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.62 RPKM in Testis
Total median expression: 858.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.3038-0.455 Picture PostScript Text
3' UTR -679.701654-0.411 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001279 - Beta-lactamas-like
IPR017782 - Hydroxyacylglutathione_Hdrlase

Pfam Domains:
PF00753 - Metallo-beta-lactamase superfamily
PF16123 - Hydroxyacylglutathione hydrolase C-terminus

SCOP Domains:
56281 - Metallo-hydrolase/oxidoreductase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1QH3 - X-ray MuPIT 1QH5 - X-ray MuPIT 2F50 - Model


ModBase Predicted Comparative 3D Structure on Q16775
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004416 hydroxyacylglutathione hydrolase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006090 pyruvate metabolic process
GO:0006750 glutathione biosynthetic process
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  JD443378 - Sequence 424402 from Patent EP1572962.
JD073055 - Sequence 54079 from Patent EP1572962.
JD444788 - Sequence 425812 from Patent EP1572962.
JD099955 - Sequence 80979 from Patent EP1572962.
JD050370 - Sequence 31394 from Patent EP1572962.
JD220782 - Sequence 201806 from Patent EP1572962.
AK298174 - Homo sapiens cDNA FLJ50821 complete cds, highly similar to Homo sapiens hydroxyacylglutathione hydrolase (HAGH), transcript variant 1, mRNA.
AK299993 - Homo sapiens cDNA FLJ60347 complete cds, highly similar to Homo sapiens hydroxyacylglutathione hydrolase (HAGH), transcript variant 1, mRNA.
X90999 - H.sapiens mRNA for Glyoxalase II.
BC000840 - Homo sapiens hydroxyacylglutathione hydrolase, mRNA (cDNA clone MGC:5303 IMAGE:3457214), complete cds.
BC002627 - Homo sapiens hydroxyacylglutathione hydrolase, mRNA (cDNA clone MGC:3589 IMAGE:3608098), complete cds.
AK054943 - Homo sapiens cDNA FLJ30381 fis, clone BRACE2008021.
AK299173 - Homo sapiens cDNA FLJ60825 complete cds, highly similar to Homo sapiens hydroxyacylglutathione hydrolase (HAGH), transcript variant 1, mRNA.
JD561793 - Sequence 542817 from Patent EP1572962.
AK290155 - Homo sapiens cDNA FLJ77033 complete cds, highly similar to Homo sapiens hydroxyacylglutathione hydrolase (HAGH), mRNA.
JD144169 - Sequence 125193 from Patent EP1572962.
CU674420 - Synthetic construct Homo sapiens gateway clone IMAGE:100018645 5' read HAGH mRNA.
CU678070 - Synthetic construct Homo sapiens gateway clone IMAGE:100016916 5' read HAGH mRNA.
KJ891330 - Synthetic construct Homo sapiens clone ccsbBroadEn_00724 HAGH gene, encodes complete protein.
KJ896955 - Synthetic construct Homo sapiens clone ccsbBroadEn_06349 HAGH gene, encodes complete protein.
DQ891220 - Synthetic construct clone IMAGE:100003850; FLH170264.01X; RZPDo839D0698D hydroxyacylglutathione hydrolase (HAGH) gene, encodes complete protein.
DQ891221 - Synthetic construct Homo sapiens clone IMAGE:100003851; FLH263544.01X; RZPDo839D0798D hydroxyacylglutathione hydrolase (HAGH) gene, encodes complete protein.
DQ894403 - Synthetic construct Homo sapiens clone IMAGE:100008863; FLH170260.01L; RZPDo839D0697D hydroxyacylglutathione hydrolase (HAGH) gene, encodes complete protein.
EU176259 - Synthetic construct Homo sapiens clone IMAGE:100006621; FLH264082.01X; RZPDo839B01257D hydroxyacylglutathione hydrolase (HAGH) gene, encodes complete protein.
AK308825 - Homo sapiens cDNA, FLJ98866.
JD424201 - Sequence 405225 from Patent EP1572962.
JD128924 - Sequence 109948 from Patent EP1572962.
JD137791 - Sequence 118815 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-5386 - methylglyoxal degradation I

Reactome (by CSHL, EBI, and GO)

Protein Q16775 (Reactome details) participates in the following event(s):

R-HSA-6783221 HAGH hydrolyses (R)-S-LGSH to GSH and LACT
R-HSA-70268 Pyruvate metabolism
R-HSA-71406 Pyruvate metabolism and Citric Acid (TCA) cycle
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K290, B4DP33, B4DRA7, E7EN93, ENST00000397356.1, ENST00000397356.2, ENST00000397356.3, ENST00000397356.4, ENST00000397356.5, ENST00000397356.6, ENST00000397356.7, GLO2, GLO2_HUMAN, HAGH1, NM_005326, Q16775, uc318yyl.1, uc318yyl.2
UCSC ID: ENST00000397356.8_9
RefSeq Accession: NM_005326.6
Protein: Q16775 (aka GLO2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.