Human Gene HAT1 (ENST00000264108.5_4) from GENCODE V47lift37
  Description: histone acetyltransferase 1, transcript variant 1 (from RefSeq NM_003642.4)
Gencode Transcript: ENST00000264108.5_4
Gencode Gene: ENSG00000128708.13_8
Transcript (Including UTRs)
   Position: hg19 chr2:172,778,971-172,848,600 Size: 69,630 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr2:172,779,011-172,848,266 Size: 69,256 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:172,778,971-172,848,600)mRNA (may differ from genome)Protein (419 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: HAT1_HUMAN
DESCRIPTION: RecName: Full=Histone acetyltransferase type B catalytic subunit; EC=2.3.1.48; AltName: Full=Histone acetyltransferase 1;
FUNCTION: Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. May be involved in nucleosome assembly during DNA replication and repair as part of the histone H3.1 and H3.3 complexes. May play a role in DNA repair in response to free radical damage.
CATALYTIC ACTIVITY: Acetyl-CoA + [histone] = CoA + acetyl- [histone].
SUBUNIT: Catalytic subunit of the type B histone acetlytransferase (HAT) complex, composed of RBBP7 and HAT1. Interacts with histones H4 and H2A. The interaction is dependent of the ability of RBBP7 to bind to the N-terminus of histones. Component of the histone H3.1 and H3.3 complexes.
INTERACTION: P62805:HIST2H4B; NbExp=4; IntAct=EBI-2339359, EBI-302023; P12520:vpr (xeno); NbExp=3; IntAct=EBI-2339359, EBI-6164519;
SUBCELLULAR LOCATION: Isoform A: Nucleus matrix.
SUBCELLULAR LOCATION: Isoform B: Cytoplasm. Nucleus. Nucleus matrix. Nucleus, nucleoplasm. Note=Localization is predominantly nuclear in normal cells. Treatment with hydrogen peroxide or ionizing radiation enhances nuclear localization through redistribution of existing protein.
DEVELOPMENTAL STAGE: Highly expressed in mitotic cells (at protein level).
INDUCTION: Up-regulated by estrogen.
SIMILARITY: Belongs to the HAT1 family.
SEQUENCE CAUTION: Sequence=AAH18682.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
WEB RESOURCE: Name=Wikipedia; Note=Histone acetyltransferase entry; URL="http://en.wikipedia.org/wiki/Histone_acetyltransferase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.92 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 493.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.3040-0.233 Picture PostScript Text
3' UTR -56.30334-0.169 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016181 - Acyl_CoA_acyltransferase
IPR019467 - Hat1_N
IPR017380 - Hist_AcTrfase_B-typ_cat-su

Pfam Domains:
PF10394 - Histone acetyl transferase HAT1 N-terminus

SCOP Domains:
55729 - Acyl-CoA N-acyltransferases (Nat)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2P0W - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O14929
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004402 histone acetyltransferase activity
GO:0005515 protein binding
GO:0010485 H4 histone acetyltransferase activity
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0042393 histone binding

Biological Process:
GO:0006323 DNA packaging
GO:0006325 chromatin organization
GO:0006335 DNA replication-dependent nucleosome assembly
GO:0006336 DNA replication-independent nucleosome assembly
GO:0006348 chromatin silencing at telomere
GO:0006475 internal protein amino acid acetylation
GO:0007584 response to nutrient
GO:0016573 histone acetylation
GO:0043967 histone H4 acetylation

Cellular Component:
GO:0000784 nuclear chromosome, telomeric region
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016363 nuclear matrix
GO:0032991 macromolecular complex
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  LQ871061 - Sequence 4 from Patent EP3369434.
LX156536 - WO 2017073692-A/4: Inhibitor of methylation-related enzyme HAT1 and KAT8.
LQ871058 - Sequence 1 from Patent EP3369434.
LX156533 - WO 2017073692-A/1: Inhibitor of methylation-related enzyme HAT1 and KAT8.
AK313699 - Homo sapiens cDNA, FLJ94292.
BC063003 - Homo sapiens histone acetyltransferase 1, mRNA (cDNA clone MGC:75156 IMAGE:5201102), complete cds.
LQ871059 - Sequence 2 from Patent EP3369434.
LX156534 - WO 2017073692-A/2: Inhibitor of methylation-related enzyme HAT1 and KAT8.
AK309001 - Homo sapiens cDNA, FLJ99042.
AF030424 - Homo sapiens histone acetyltransferase 1 mRNA, complete cds.
JD409189 - Sequence 390213 from Patent EP1572962.
BC045673 - Homo sapiens histone acetyltransferase 1, mRNA (cDNA clone IMAGE:5298826), with apparent retained intron.
LQ871060 - Sequence 3 from Patent EP3369434.
LX156535 - WO 2017073692-A/3: Inhibitor of methylation-related enzyme HAT1 and KAT8.
LQ871067 - Sequence 10 from Patent EP3369434.
LX156542 - WO 2017073692-A/10: Inhibitor of methylation-related enzyme HAT1 and KAT8.
CU687622 - Synthetic construct Homo sapiens gateway clone IMAGE:100021705 5' read HAT1 mRNA.
HQ448051 - Synthetic construct Homo sapiens clone IMAGE:100071430; CCSB012096_01 histone acetyltransferase 1 (HAT1) gene, encodes complete protein.
KJ901883 - Synthetic construct Homo sapiens clone ccsbBroadEn_11277 HAT1 gene, encodes complete protein.
AK127840 - Homo sapiens cDNA FLJ45943 fis, clone PLACE7006268, highly similar to Histone acetyltransferase type B catalytic subunit (EC 2.3.1.48).
LQ871068 - Sequence 11 from Patent EP3369434.
LX156543 - WO 2017073692-A/11: Inhibitor of methylation-related enzyme HAT1 and KAT8.
BC018682 - Homo sapiens histone acetyltransferase 1, mRNA (cDNA clone IMAGE:4687392), complete cds.
LQ871069 - Sequence 12 from Patent EP3369434.
LX156544 - WO 2017073692-A/12: Inhibitor of methylation-related enzyme HAT1 and KAT8.
KJ905964 - Synthetic construct Homo sapiens clone ccsbBroadEn_15634 HAT1 gene, encodes complete protein.
LQ871070 - Sequence 13 from Patent EP3369434.
LX156545 - WO 2017073692-A/13: Inhibitor of methylation-related enzyme HAT1 and KAT8.
JD357110 - Sequence 338134 from Patent EP1572962.
JD494783 - Sequence 475807 from Patent EP1572962.
JD235368 - Sequence 216392 from Patent EP1572962.
JD296425 - Sequence 277449 from Patent EP1572962.
JD263674 - Sequence 244698 from Patent EP1572962.
JD241146 - Sequence 222170 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O14929 (Reactome details) participates in the following event(s):

R-HSA-3662318 Type B histone acetlytransferase complex acetylates histone H4
R-HSA-3214847 HATs acetylate histones
R-HSA-3247509 Chromatin modifying enzymes
R-HSA-4839726 Chromatin organization

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000264108.1, ENST00000264108.2, ENST00000264108.3, ENST00000264108.4, HAT1_HUMAN, KAT1, NM_003642, O14929, Q49A44, Q53QF0, Q53SU4, Q6P594, Q8WWB9, uc317hpg.1, uc317hpg.2
UCSC ID: ENST00000264108.5_4
RefSeq Accession: NM_003642.4
Protein: O14929 (aka HAT1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.