Human Gene HAX1 (ENST00000328703.12_11) from GENCODE V47lift37
  Description: HCLS1 associated protein X-1, transcript variant 1 (from RefSeq NM_006118.4)
Gencode Transcript: ENST00000328703.12_11
Gencode Gene: ENSG00000143575.16_18
Transcript (Including UTRs)
   Position: hg19 chr1:154,245,105-154,248,351 Size: 3,247 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr1:154,245,200-154,248,177 Size: 2,978 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:154,245,105-154,248,351)mRNA (may differ from genome)Protein (279 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HAX1_HUMAN
DESCRIPTION: RecName: Full=HCLS1-associated protein X-1; AltName: Full=HS1-associating protein X-1; Short=HAX-1; AltName: Full=HS1-binding protein 1; Short=HSP1BP-1;
FUNCTION: Promotes cell survival. Potentiates GNA13-mediated cell migration. Involved in the clathrin-mediated endocytosis pathway. May be involved in internalization of ABC transporters such as ABCB11. May inhibit CASP9 and CASP3. May regulate intracellular calcium pools.
SUBUNIT: Interacts with ABCB1, ABCB4 and ABCB11 (By similarity). Directly associates with HCLS1/HS1, through binding to its N- terminal region. Interacts with CTTN. Interacts with PKD2. Interacts with GNA13. Interacts with CASP9. Interacts with ITGB6. Interacts with PLN and ATP2A2; these interactions are inhibited by calcium. Interacts with GRB7. Interacts (via C-terminus) with XIAP/BIRC4 (via BIR 2 domain and BIR 3 domain) and this interaction blocks ubiquitination of XIAP/BIRC4.
INTERACTION: P03372:ESR1; NbExp=2; IntAct=EBI-357001, EBI-78473; Q14451:GRB7; NbExp=2; IntAct=EBI-357001, EBI-970191;
SUBCELLULAR LOCATION: Mitochondrion. Endoplasmic reticulum. Nucleus membrane. Cytoplasmic vesicle (By similarity). Sarcoplasmic reticulum (By similarity).
TISSUE SPECIFICITY: Ubiquitous. Up-regulated in oral cancers.
PTM: Proteolytically cleaved by caspase-3 during apoptosis.
DISEASE: Defects in HAX1 are the cause of neutropenia severe congenital autosomal recessive type 3 (SCN3) [MIM:610738]; also known as Kostmann disease. A disorder of hematopoiesis characterized by maturation arrest of granulopoiesis at the level of promyelocytes with peripheral blood absolute neutrophil counts below 0.5 x 10(9)/l and early onset of severe bacterial infections. Some patients affected by severe congenital neutropenia type 3 have neurological manifestations such as psychomotor retardation and seizures. Note=The clinical phenotype due to HAX1 deficiency appears to depend on the localization of the mutations and their influence on the transcript variants. Mutations affecting exclusively isoform 1 are associated with isolated congenital neutropenia, whereas mutations affecting both isoform 1 and isoform 5 are associated with additional neurologic symptoms.
SIMILARITY: Belongs to the HAX1 family.
WEB RESOURCE: Name=HAX1base; Note=HAX1 mutation db; URL="http://bioinf.uta.fi/HAX1base/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HAX1
Diseases sorted by gene-association score: neutropenia, severe congenital 3, autosomal recessive* (1680), severe congenital neutropenia (24), neutropenia (21), spherocytosis, type 1 (11), polycystic kidney disease 2 (10), polycystic kidney disease (8), spinocerebellar ataxia 13 (7), cd40 ligand deficiency (6), leukocyte disease (4), hereditary spherocytosis (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 83.13 RPKM in Pituitary
Total median expression: 2258.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -30.6095-0.322 Picture PostScript Text
3' UTR -37.00174-0.213 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017248 - HS1--assoc_X-1

ModBase Predicted Comparative 3D Structure on O00165
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019966 interleukin-1 binding
GO:0047485 protein N-terminus binding

Biological Process:
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0030833 regulation of actin filament polymerization
GO:0030854 positive regulation of granulocyte differentiation
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0042981 regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0051897 positive regulation of protein kinase B signaling
GO:0071345 cellular response to cytokine stimulus
GO:1903146 regulation of mitophagy
GO:1903214 regulation of protein targeting to mitochondrion
GO:2000251 positive regulation of actin cytoskeleton reorganization
GO:0007005 mitochondrion organization

Cellular Component:
GO:0000932 P-body
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005667 transcription factor complex
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005758 mitochondrial intermembrane space
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0005938 cell cortex
GO:0015629 actin cytoskeleton
GO:0016020 membrane
GO:0016529 sarcoplasmic reticulum
GO:0030027 lamellipodium
GO:0031410 cytoplasmic vesicle
GO:0031965 nuclear membrane


-  Descriptions from all associated GenBank mRNAs
  BC005240 - Homo sapiens HCLS1 associated protein X-1, mRNA (cDNA clone MGC:12268 IMAGE:3931805), complete cds.
LF206192 - JP 2014500723-A/13695: Polycomb-Associated Non-Coding RNAs.
U68566 - Human HS1 binding protein HAX-1 mRNA, nuclear gene encoding mitochondrial protein, complete cds.
AK300676 - Homo sapiens cDNA FLJ53021 complete cds, highly similar to HS1-associating protein X-1.
AK313291 - Homo sapiens cDNA, FLJ93803.
BC016730 - Homo sapiens HCLS1 associated protein X-1, mRNA (cDNA clone MGC:24467 IMAGE:4082810), complete cds.
EU190982 - Homo sapiens HCLS1 associated protein X-1 isoform 4 (HAX1) mRNA, complete cds, alternatively spliced.
AK294298 - Homo sapiens cDNA FLJ59195 complete cds, highly similar to HS1-associating protein X-1.
AK290626 - Homo sapiens cDNA FLJ76609 complete cds, highly similar to Homo sapiens HS1 binding protein (HAX1), mRNA.
AK310000 - Homo sapiens cDNA, FLJ17042.
BC014314 - Homo sapiens HCLS1 associated protein X-1, mRNA (cDNA clone MGC:22696 IMAGE:3931852), complete cds.
AK311450 - Homo sapiens cDNA, FLJ18492.
EU190983 - Homo sapiens HCLS1 associated protein X-1 isoform 3 (HAX1) mRNA, complete cds, alternatively spliced.
BC015209 - Homo sapiens HCLS1 associated protein X-1, mRNA (cDNA clone MGC:17257 IMAGE:3883802), complete cds.
JD020737 - Sequence 1761 from Patent EP1572962.
LF352288 - JP 2014500723-A/159791: Polycomb-Associated Non-Coding RNAs.
JD035123 - Sequence 16147 from Patent EP1572962.
AB463719 - Synthetic construct DNA, clone: pF1KB6328, Homo sapiens HAX1 gene for HCLS1 associated protein X-1, without stop codon, in Flexi system.
KU178523 - Homo sapiens HCLS1 associated protein X-1 isoform 1 (HAX1) mRNA, partial cds.
KU178524 - Homo sapiens HCLS1 associated protein X-1 isoform 3 (HAX1) mRNA, partial cds.
KU178525 - Homo sapiens HCLS1 associated protein X-1 isoform 5 (HAX1) mRNA, complete cds, alternatively spliced.
CU677241 - Synthetic construct Homo sapiens gateway clone IMAGE:100018707 5' read HAX1 mRNA.
CU677697 - Synthetic construct Homo sapiens gateway clone IMAGE:100018706 5' read HAX1 mRNA.
HQ447125 - Synthetic construct Homo sapiens clone IMAGE:100070413; CCSB005524_01 HCLS1 associated protein X-1 (HAX1) gene, encodes complete protein.
JF432154 - Synthetic construct Homo sapiens clone IMAGE:100073300 HCLS1 associated protein X-1 (HAX1) gene, encodes complete protein.
KJ893049 - Synthetic construct Homo sapiens clone ccsbBroadEn_02443 HAX1 gene, encodes complete protein.
KJ898216 - Synthetic construct Homo sapiens clone ccsbBroadEn_07610 HAX1 gene, encodes complete protein.
KJ906041 - Synthetic construct Homo sapiens clone ccsbBroadEn_15711 HAX1 gene, encodes complete protein.
JD033747 - Sequence 14771 from Patent EP1572962.
JD030814 - Sequence 11838 from Patent EP1572962.
LF350757 - JP 2014500723-A/158260: Polycomb-Associated Non-Coding RNAs.
LF352284 - JP 2014500723-A/159787: Polycomb-Associated Non-Coding RNAs.
LF352283 - JP 2014500723-A/159786: Polycomb-Associated Non-Coding RNAs.
LF352281 - JP 2014500723-A/159784: Polycomb-Associated Non-Coding RNAs.
JD124131 - Sequence 105155 from Patent EP1572962.
LF352280 - JP 2014500723-A/159783: Polycomb-Associated Non-Coding RNAs.
LF352279 - JP 2014500723-A/159782: Polycomb-Associated Non-Coding RNAs.
JD076156 - Sequence 57180 from Patent EP1572962.
JD403736 - Sequence 384760 from Patent EP1572962.
JD552016 - Sequence 533040 from Patent EP1572962.
MA587865 - JP 2018138019-A/159791: Polycomb-Associated Non-Coding RNAs.
MA586334 - JP 2018138019-A/158260: Polycomb-Associated Non-Coding RNAs.
MA587861 - JP 2018138019-A/159787: Polycomb-Associated Non-Coding RNAs.
MA587860 - JP 2018138019-A/159786: Polycomb-Associated Non-Coding RNAs.
MA587858 - JP 2018138019-A/159784: Polycomb-Associated Non-Coding RNAs.
MA587857 - JP 2018138019-A/159783: Polycomb-Associated Non-Coding RNAs.
MA587856 - JP 2018138019-A/159782: Polycomb-Associated Non-Coding RNAs.
MA441769 - JP 2018138019-A/13695: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A8W4W9, A8W4X0, B4DUJ7, ENST00000328703.1, ENST00000328703.10, ENST00000328703.11, ENST00000328703.2, ENST00000328703.3, ENST00000328703.4, ENST00000328703.5, ENST00000328703.6, ENST00000328703.7, ENST00000328703.8, ENST00000328703.9, HAX1_HUMAN, HS1BP1, NM_006118, O00165, Q5VYD5, Q5VYD7, Q96AU4, Q9BS80, uc317sob.1, uc317sob.2
UCSC ID: ENST00000328703.12_11
RefSeq Accession: NM_006118.4
Protein: O00165 (aka HAX1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.