Human Gene HBEGF (ENST00000230990.7_8) from GENCODE V47lift37
  Description: heparin binding EGF like growth factor (from RefSeq NM_001945.3)
Gencode Transcript: ENST00000230990.7_8
Gencode Gene: ENSG00000113070.8_10
Transcript (Including UTRs)
   Position: hg19 chr5:139,712,428-139,726,188 Size: 13,761 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr5:139,714,261-139,725,913 Size: 11,653 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:139,712,428-139,726,188)mRNA (may differ from genome)Protein (208 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HBEGF_HUMAN
DESCRIPTION: RecName: Full=Proheparin-binding EGF-like growth factor; Contains: RecName: Full=Heparin-binding EGF-like growth factor; Short=HB-EGF; Short=HBEGF; AltName: Full=Diphtheria toxin receptor; Short=DT-R; Flags: Precursor;
FUNCTION: Growth factor that mediates its effects via EGFR, ERBB2 and ERBB4. Required for normal cardiac valve formation and normal heart function. Promotes smooth muscle cell proliferation. May be involved in macrophage-mediated cellular proliferation. It is mitogenic for fibroblasts, but not endothelial cells. It is able to bind EGF receptor/EGFR with higher affinity than EGF itself and is a far more potent mitogen for smooth muscle cells than EGF. Also acts as a diphtheria toxin receptor.
SUBUNIT: Interacts with FBLN1 (By similarity). Interacts with EGFR and ERBB4.
SUBCELLULAR LOCATION: Heparin-binding EGF-like growth factor: Secreted, extracellular space. Note=Mature HB-EGF is released into the extracellular space and probably binds to a receptor.
SUBCELLULAR LOCATION: Proheparin-binding EGF-like growth factor: Cell membrane; Single-pass type I membrane protein.
PTM: Several N-termini have been identified by direct sequencing. The forms with N-termini 63, 73 and 74 have been tested and found to be biologically active.
PTM: O-glycosylated with core 1 or possibly core 8 glycans. Thr-47 is a minor glycosylation site compared to Thr-44.
SIMILARITY: Contains 1 EGF-like domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/dtr/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HBEGF
Diseases sorted by gene-association score: diphtheria (77), bladder disease (16), perinatal necrotizing enterocolitis (15), interstitial cystitis (15), urinary tract obstruction (14), skin atrophy (13), cystitis (10), prostate disease (8), warthin tumor (7), exposure keratitis (6), miles-carpenter syndrome (5), primary bacterial infectious disease (4), pancreatic cancer (3), obesity (2), breast cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 40.82 RPKM in Adipose - Visceral (Omentum)
Total median expression: 427.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -139.20275-0.506 Picture PostScript Text
3' UTR -408.501456-0.281 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000742 - EG-like_dom
IPR013032 - EGF-like_CS
IPR015497 - EGF_rcpt_ligand

Pfam Domains:
PF00008 - EGF-like domain

SCOP Domains:
57196 - EGF/Laminin

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1XDT - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q99075
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004713 protein tyrosine kinase activity
GO:0005088 Ras guanyl-nucleotide exchange factor activity
GO:0005154 epidermal growth factor receptor binding
GO:0008083 growth factor activity
GO:0008201 heparin binding
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity

Biological Process:
GO:0000165 MAPK cascade
GO:0007165 signal transduction
GO:0007173 epidermal growth factor receptor signaling pathway
GO:0007517 muscle organ development
GO:0008016 regulation of heart contraction
GO:0008284 positive regulation of cell proliferation
GO:0010469 regulation of receptor activity
GO:0016477 cell migration
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0030307 positive regulation of cell growth
GO:0030335 positive regulation of cell migration
GO:0035313 wound healing, spreading of epidermal cells
GO:0038128 ERBB2 signaling pathway
GO:0046854 phosphatidylinositol phosphorylation
GO:0048661 positive regulation of smooth muscle cell proliferation
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0051545 negative regulation of elastin biosynthetic process
GO:0051549 positive regulation of keratinocyte migration
GO:0051897 positive regulation of protein kinase B signaling
GO:0060326 cell chemotaxis
GO:0090303 positive regulation of wound healing
GO:2000145 regulation of cell motility

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030666 endocytic vesicle membrane
GO:0030669 clathrin-coated endocytic vesicle membrane


-  Descriptions from all associated GenBank mRNAs
  M60278 - Human heparin-binding EGF-like growth factor mRNA, complete cds.
BC033097 - Homo sapiens heparin-binding EGF-like growth factor, mRNA (cDNA clone MGC:45671 IMAGE:5424240), complete cds.
LF211015 - JP 2014500723-A/18518: Polycomb-Associated Non-Coding RNAs.
AK222688 - Homo sapiens mRNA for diphtheria toxin receptor (heparin-binding epidermal growth factor-like growth factor) variant, clone: CBR08573.
AK307310 - Homo sapiens cDNA, FLJ97258.
EU832647 - Synthetic construct Homo sapiens clone HAIB:100067676; DKFZo008E0831 heparin-binding EGF-like growth factor protein (HBEGF) gene, encodes complete protein.
AK313202 - Homo sapiens cDNA, FLJ93701, Homo sapiens diphtheria toxin receptor (heparin-binding epidermalgrowth factor-like growth factor) (DTR), mRNA.
KJ891072 - Synthetic construct Homo sapiens clone ccsbBroadEn_00466 HBEGF gene, encodes complete protein.
EU832724 - Synthetic construct Homo sapiens clone HAIB:100067753; DKFZo004E0832 heparin-binding EGF-like growth factor protein (HBEGF) gene, encodes complete protein.
MA446592 - JP 2018138019-A/18518: Polycomb-Associated Non-Coding RNAs.
JD260057 - Sequence 241081 from Patent EP1572962.
JD226295 - Sequence 207319 from Patent EP1572962.
JD280890 - Sequence 261914 from Patent EP1572962.
JD342691 - Sequence 323715 from Patent EP1572962.
JD239918 - Sequence 220942 from Patent EP1572962.
JD559126 - Sequence 540150 from Patent EP1572962.
JD114558 - Sequence 95582 from Patent EP1572962.
LF343241 - JP 2014500723-A/150744: Polycomb-Associated Non-Coding RNAs.
JD045123 - Sequence 26147 from Patent EP1572962.
JD486049 - Sequence 467073 from Patent EP1572962.
JD120100 - Sequence 101124 from Patent EP1572962.
JD150971 - Sequence 131995 from Patent EP1572962.
LF343242 - JP 2014500723-A/150745: Polycomb-Associated Non-Coding RNAs.
JD190767 - Sequence 171791 from Patent EP1572962.
JD297942 - Sequence 278966 from Patent EP1572962.
JD080146 - Sequence 61170 from Patent EP1572962.
JD254277 - Sequence 235301 from Patent EP1572962.
LF343243 - JP 2014500723-A/150746: Polycomb-Associated Non-Coding RNAs.
JD234514 - Sequence 215538 from Patent EP1572962.
JD348601 - Sequence 329625 from Patent EP1572962.
JD267017 - Sequence 248041 from Patent EP1572962.
JD524173 - Sequence 505197 from Patent EP1572962.
LF343245 - JP 2014500723-A/150748: Polycomb-Associated Non-Coding RNAs.
JD538202 - Sequence 519226 from Patent EP1572962.
JD543989 - Sequence 525013 from Patent EP1572962.
JD126916 - Sequence 107940 from Patent EP1572962.
JD255523 - Sequence 236547 from Patent EP1572962.
JD230565 - Sequence 211589 from Patent EP1572962.
JD284327 - Sequence 265351 from Patent EP1572962.
JD561208 - Sequence 542232 from Patent EP1572962.
JD053688 - Sequence 34712 from Patent EP1572962.
JD424755 - Sequence 405779 from Patent EP1572962.
LF343247 - JP 2014500723-A/150750: Polycomb-Associated Non-Coding RNAs.
JD155334 - Sequence 136358 from Patent EP1572962.
JD045956 - Sequence 26980 from Patent EP1572962.
JD050188 - Sequence 31212 from Patent EP1572962.
LF343249 - JP 2014500723-A/150752: Polycomb-Associated Non-Coding RNAs.
JD330445 - Sequence 311469 from Patent EP1572962.
JD357924 - Sequence 338948 from Patent EP1572962.
LF343250 - JP 2014500723-A/150753: Polycomb-Associated Non-Coding RNAs.
LF343254 - JP 2014500723-A/150757: Polycomb-Associated Non-Coding RNAs.
MA578818 - JP 2018138019-A/150744: Polycomb-Associated Non-Coding RNAs.
MA578819 - JP 2018138019-A/150745: Polycomb-Associated Non-Coding RNAs.
MA578820 - JP 2018138019-A/150746: Polycomb-Associated Non-Coding RNAs.
MA578822 - JP 2018138019-A/150748: Polycomb-Associated Non-Coding RNAs.
MA578824 - JP 2018138019-A/150750: Polycomb-Associated Non-Coding RNAs.
MA578826 - JP 2018138019-A/150752: Polycomb-Associated Non-Coding RNAs.
MA578827 - JP 2018138019-A/150753: Polycomb-Associated Non-Coding RNAs.
MA578831 - JP 2018138019-A/150757: Polycomb-Associated Non-Coding RNAs.
JD460376 - Sequence 441400 from Patent EP1572962.
JD495670 - Sequence 476694 from Patent EP1572962.
JD395095 - Sequence 376119 from Patent EP1572962.
JD409069 - Sequence 390093 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nfatPathway - NFAT and Hypertrophy of the heart (Transcription in the broken heart)

Reactome (by CSHL, EBI, and GO)

Protein Q99075 (Reactome details) participates in the following event(s):

R-HSA-2179402 Active MMP3 can cleave pro-HBEGF to form active HBEGF
R-HSA-5336417 DT A:B binds HBEGF and CD9 on the target cell surface
R-HSA-8857549 HBEGF-bound EGFR forms a heterodimer with GPNMB
R-HSA-2179415 GRB2:SOS1 binds to HBEGF:p-Y-EGFR
R-HSA-8857555 EGFR phosphorylates GPNMB
R-HSA-8857565 Phosphorylated GPNMB recruits PTK6 and LRRK2 in the presence of LINC01139
R-HSA-1236398 ERBB4 binds NRGs or EGF-like ligands
R-HSA-8857577 LINC01139 facilitates PTK6 autophosphorylation
R-HSA-2179407 SOS1-mediated nucleotide exchange of RAS (HB-EFG-initiated)
R-HSA-8857583 LINC01139 promotes phosphorylation of HIF1A by PTK6 and LRRK2
R-HSA-1963589 ERBB2 forms heterodimers with ligand-activated ERBB receptors: EGFR, ERBB3 and ERBB4
R-NUL-1251988 Cleavage of P-ERBB4jmA isoforms by Adam17
R-HSA-1250220 Homodimerization of ERBB4
R-HSA-1977958 ERBB4 forms heterodimers with ERBB3
R-HSA-1977959 ERBB4 forms heterodimers with EGFR
R-HSA-5672965 RAS GEFs promote RAS nucleotide exchange
R-HSA-1250346 Binding of PI3K to p-ERBB2:p-ERBB4 CYT-1 heterodimers
R-HSA-1250357 SHC1 binds P-ERBB4 isoform dimers
R-HSA-1250315 Trans-autophosphorylation of ERBB4 homodimers
R-HSA-1251992 Cleavage of P-ERBB4jmA isoforms by ADAM17
R-HSA-1250353 Binding of p85 subunit of PI3K (PIK3R1) to p-ERBB4cyt1 homodimers
R-HSA-1963582 Trans-autophosphorylation of ERBB2 heterodimers
R-HSA-1963586 SRC family kinases phosphorylate ERBB2
R-HSA-1963581 Trans-autophosphorylation of p-Y877-ERBB2 heterodimers
R-HSA-1306969 GRB2:SOS1 complex binds phosphorylated ERBB4:ERBB2 heterodimers
R-HSA-1250380 Recruitment of GRB2:SOS1 to phosphorylated SHC1 in complex with phosphorylated ERBB4 homodimers
R-HSA-1250348 Phosphorylation of SHC1 by ERBB4 homodimers
R-HSA-1250372 Recruitment of PI3K subunit p110 (PIK3CA) to PI3K subunit p85 (PIK3R1) bound to p-ERBB4cyt1 homodimers
R-HSA-1306979 PIP2 to PIP3 conversion by PI3K bound to phosphorylated heterodimer of ERBB2 and ERBB4 CYT1
R-HSA-1963563 MATK (CSK homologous kinase) binds phosphorylated ERBB2
R-HSA-1963578 SHC1 binds phosphorylated ERBB2 heterodimers
R-HSA-6785636 Phosphorylated ERBB2 heterodimers bind MEMO1
R-HSA-8847995 Activated ERBB2 binds PTK6 (BRK)
R-HSA-8863804 PTPN12 dephosphorylates ERBB2 on tyrosine Y1248
R-HSA-8848005 ERBB2 promotes PTK6 autophosphorylation
R-HSA-2400009 PI3K inhibitors block PI3K catalytic activity
R-HSA-2316434 PI3K phosphorylates PIP2 to PIP3
R-HSA-1306972 RAS guanyl nucleotide exchange mediated by SOS1 bound to GRB2 in complex with phosphorylated ERBB4:ERBB2 heterodimers
R-HSA-1250195 SHC1 phosphorylation by ERBB2 heterodimers
R-HSA-1250486 Recruitment of GRB2:SOS1 to p-SHC1 in complex with phosphorylated ERBB2 heterodimers
R-HSA-6785648 MEMO1 binds RHOA:GTP:DIAPH1
R-HSA-1250383 RAS guanyl-nucleotide exchange mediated by SOS1 in complex with GRB2 and p-Y349,350-SHC1:p-ERBB4
R-HSA-1250370 Conversion of PIP2 into PIP3 by PI3K bound to p-ERBB4cyt1 homodimers
R-HSA-1250463 RAS guanyl-nucleotide exchange mediated by SOS1 in complex with GRB2 and p-SHC1:Phosphorylated ERBB2 heterodimers
R-HSA-2179392 EGFR Transactivation by Gastrin
R-HSA-5336415 Uptake and function of diphtheria toxin
R-HSA-8857538 PTK6 promotes HIF1A stabilization
R-HSA-881907 Gastrin-CREB signalling pathway via PKC and MAPK
R-HSA-5339562 Uptake and actions of bacterial toxins
R-HSA-8848021 Signaling by PTK6
R-HSA-1236394 Signaling by ERBB4
R-HSA-416476 G alpha (q) signalling events
R-HSA-5663205 Infectious disease
R-HSA-9006927 Signaling by Non-Receptor Tyrosine Kinases
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-388396 GPCR downstream signalling
R-HSA-1643685 Disease
R-HSA-162582 Signal Transduction
R-HSA-1227986 Signaling by ERBB2
R-HSA-372790 Signaling by GPCR
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-1963642 PI3K events in ERBB2 signaling
R-HSA-1250347 SHC1 events in ERBB4 signaling
R-HSA-1251985 Nuclear signaling by ERBB4
R-HSA-1250342 PI3K events in ERBB4 signaling
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-1963640 GRB2 events in ERBB2 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-8863795 Downregulation of ERBB2 signaling
R-HSA-1250196 SHC1 events in ERBB2 signaling
R-HSA-6785631 ERBB2 Regulates Cell Motility
R-HSA-8847993 ERBB2 Activates PTK6 Signaling
R-HSA-2219530 Constitutive Signaling by Aberrant PI3K in Cancer
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-6811558 PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-199418 Negative regulation of the PI3K/AKT network
R-HSA-5663202 Diseases of signal transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2R821, DTR, DTS, ENST00000230990.1, ENST00000230990.2, ENST00000230990.3, ENST00000230990.4, ENST00000230990.5, ENST00000230990.6, HBEGF_HUMAN, HEGFL, NM_001945, Q99075, uc317dto.1, uc317dto.2
UCSC ID: ENST00000230990.7_8
RefSeq Accession: NM_001945.3
Protein: Q99075 (aka HBEGF_HUMAN or HBGF_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.