Human Gene HEBP1 (ENST00000014930.9_7) from GENCODE V47lift37
  Description: heme binding protein 1 (from RefSeq NM_015987.5)
Gencode Transcript: ENST00000014930.9_7
Gencode Gene: ENSG00000013583.10_12
Transcript (Including UTRs)
   Position: hg19 chr12:13,127,804-13,153,199 Size: 25,396 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr12:13,128,242-13,153,048 Size: 24,807 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:13,127,804-13,153,199)mRNA (may differ from genome)Protein (189 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HEBP1_HUMAN
DESCRIPTION: RecName: Full=Heme-binding protein 1; AltName: Full=p22HBP;
FUNCTION: May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N- methylprotoporphyrin with similar affinities.
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Cytoplasm.
DOMAIN: Forms a distorted beta-barrel structure, with two helices that are packed against the outer surface of the barrel. Porphyrins are expected to bind to a hydrophobic patch on the outer surface of the beta-barrel structure (By similarity).
SIMILARITY: Belongs to the HEBP family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.73 RPKM in Adrenal Gland
Total median expression: 621.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.40151-0.321 Picture PostScript Text
3' UTR -100.10438-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011256 - Reg_factor_effector_bac
IPR006917 - SOUL_haem-bd

Pfam Domains:
PF04832 - SOUL heme-binding protein

SCOP Domains:
55136 - Probable bacterial effector-binding domain

ModBase Predicted Comparative 3D Structure on Q9NRV9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0020037 heme binding

Biological Process:
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007623 circadian rhythm

Cellular Component:
GO:0005576 extracellular region
GO:0005737 cytoplasm
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC016277 - Homo sapiens heme binding protein 1, mRNA (cDNA clone MGC:8738 IMAGE:3907035), complete cds.
AF117615 - Homo sapiens heme-binding protein (HBP) mRNA, complete cds.
JD086685 - Sequence 67709 from Patent EP1572962.
AK289877 - Homo sapiens cDNA FLJ75999 complete cds, highly similar to Homo sapiens heme binding protein 1 (HEBP1), mRNA.
JD046616 - Sequence 27640 from Patent EP1572962.
JD526012 - Sequence 507036 from Patent EP1572962.
JD088143 - Sequence 69167 from Patent EP1572962.
AF167473 - Homo sapiens heme-binding protein mRNA, complete cds.
BT007294 - Homo sapiens heme binding protein 1 mRNA, complete cds.
DQ892338 - Synthetic construct clone IMAGE:100004968; FLH185462.01X; RZPDo839B06148D heme binding protein 1 (HEBP1) gene, encodes complete protein.
DQ895543 - Synthetic construct Homo sapiens clone IMAGE:100010003; FLH185458.01L; RZPDo839B06147D heme binding protein 1 (HEBP1) gene, encodes complete protein.
JD019714 - Sequence 738 from Patent EP1572962.
JD321512 - Sequence 302536 from Patent EP1572962.
JD422352 - Sequence 403376 from Patent EP1572962.
JD156820 - Sequence 137844 from Patent EP1572962.
JD129052 - Sequence 110076 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NRV9 (Reactome details) participates in the following event(s):

R-HSA-444476 FPRL2 receptor binds a wide range of ligands
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-444473 Formyl peptide receptors bind formyl peptides and many other ligands
R-HSA-418594 G alpha (i) signalling events
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K1G2, ENST00000014930.1, ENST00000014930.2, ENST00000014930.3, ENST00000014930.4, ENST00000014930.5, ENST00000014930.6, ENST00000014930.7, ENST00000014930.8, HBP, HEBP1_HUMAN, NM_015987, Q9NRV9, Q9Y5Z5, uc317bxy.1, uc317bxy.2
UCSC ID: ENST00000014930.9_7
RefSeq Accession: NM_015987.5
Protein: Q9NRV9 (aka HEBP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.