Human Gene HEXA (ENST00000268097.10_10) from GENCODE V47lift37
  Description: hexosaminidase subunit alpha, transcript variant 2 (from RefSeq NM_000520.6)
Gencode Transcript: ENST00000268097.10_10
Gencode Gene: ENSG00000213614.11_14
Transcript (Including UTRs)
   Position: hg19 chr15:72,633,265-72,668,355 Size: 35,091 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr15:72,636,418-72,668,313 Size: 31,896 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:72,633,265-72,668,355)mRNA (may differ from genome)Protein (529 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HEXA_HUMAN
DESCRIPTION: RecName: Full=Beta-hexosaminidase subunit alpha; EC=3.2.1.52; AltName: Full=Beta-N-acetylhexosaminidase subunit alpha; Short=Hexosaminidase subunit A; AltName: Full=N-acetyl-beta-glucosaminidase subunit alpha; Flags: Precursor;
FUNCTION: Responsible for the degradation of GM2 gangliosides, and a variety of other molecules containing terminal N-acetyl hexosamines, in the brain and other tissues. The form B is active against certain oligosaccharides. The form S has no measurable activity.
CATALYTIC ACTIVITY: Hydrolysis of terminal non-reducing N-acetyl- D-hexosamine residues in N-acetyl-beta-D-hexosaminides.
SUBUNIT: There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer composed of one subunit alpha, one subunit beta chain A and one subunit beta chain B; hexosaminidase B is a tetramer of two subunit beta chains A and two subunit beta chains B; hexosaminidase S is a homodimer of two alpha subunits. The two beta chains are derived from the cleavage of the beta subunit.
INTERACTION: P00519:ABL1; NbExp=1; IntAct=EBI-723519, EBI-375543; P46108:CRK; NbExp=1; IntAct=EBI-723519, EBI-886; P06241:FYN; NbExp=1; IntAct=EBI-723519, EBI-515315;
SUBCELLULAR LOCATION: Lysosome.
PTM: N-linked glycan at Asn-115 consists of Man(3)-GlcNAc(2).
DISEASE: Defects in HEXA are the cause of GM2-gangliosidosis type 1 (GM2G1) [MIM:272800]; also known as Tay-Sachs disease. GM2- gangliosidosis is an autosomal recessive lysosomal storage disease marked by the accumulation of GM2 gangliosides in the neuronal cells. GM2G1 is characterized by GM2 gangliosides accumulation in the absence of HEXA activity, leading to neurodegeneration and, in the infantile form, death in early childhood. GM2G1 has an increased incidence among Ashkenazi Jews and French Canadians in eastern Quebec. It exists in several forms: infantile (most common and most severe), juvenile and adult (late onset).
SIMILARITY: Belongs to the glycosyl hydrolase 20 family.
WEB RESOURCE: Name=HEXAdb; Note=HEXA mutation database; URL="http://www.hexdb.mcgill.ca/?Topic=HEXAdb";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/HEXA";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HEXA
Diseases sorted by gene-association score: tay-sachs disease* (1487), tay-sachs disease, b1 variant* (750), tay-sachs disease, b variant, juvenile form* (350), tay-sachs disease, b variant, infantile form* (350), tay-sachs disease, b variant, adult form* (350), chronic and adult-onset hexosaminidase a deficiency* (100), juvenile hexosaminidase a deficiency* (100), mucolipidosis iv (28), sandhoff disease, infantile, juvenile, and adult forms (22), gangliosidosis gm2 (20), gangliosidosis gm1 (14), mucolipidoses (12), mannosidosis, alpha-, types i and ii (12), lysosomal storage disease (12), cerebral lipidosis (11), lobomycosis (11), childhood disintegrative disease (9), fucosidosis (9), metachromatic leukodystrophy (8), mucopolysaccharidosis is (8), internuclear ophthalmoplegia (7), motor neuron disease (7), sphingolipidosis (7), progressive bulbar palsy (7), dermatomycosis (6), mucopolysaccharidosis vii (6), mucopolysaccharidosis-plus syndrome (6), spinal muscular atrophy-3 (6), lipid storage disease (6), non-langerhans-cell histiocytosis (5), mannosidosis, beta (4), spinal muscular atrophy (4), inherited metabolic disorder (1), amyotrophic lateral sclerosis 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.54 RPKM in Thyroid
Total median expression: 981.09 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.5042-0.417 Picture PostScript Text
3' UTR -1099.003153-0.349 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR025705 - Beta_hexosaminidase_sua/sub
IPR015883 - Glyco_hydro_20_cat-core
IPR015882 - Glyco_hydro_20b
IPR013781 - Glyco_hydro_catalytic_dom
IPR017853 - Glycoside_hydrolase_SF

Pfam Domains:
PF00728 - Glycosyl hydrolase family 20, catalytic domain
PF14845 - beta-acetyl hexosaminidase like

SCOP Domains:
51445 - (Trans)glycosidases
51556 - Metallo-dependent hydrolases
55545 - beta-N-acetylhexosaminidase-like domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1QBC - Model 2GJX - X-ray 2GK1 - X-ray


ModBase Predicted Comparative 3D Structure on P06865
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563 beta-N-acetylhexosaminidase activity
GO:0005515 protein binding
GO:0008375 acetylglucosaminyltransferase activity
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0005975 carbohydrate metabolic process
GO:0006024 glycosaminoglycan biosynthetic process
GO:0006687 glycosphingolipid metabolic process
GO:0008152 metabolic process
GO:0030207 chondroitin sulfate catabolic process
GO:0030214 hyaluronan catabolic process
GO:0042340 keratan sulfate catabolic process

Cellular Component:
GO:0005764 lysosome
GO:0016020 membrane
GO:0042582 azurophil granule
GO:0043202 lysosomal lumen
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AB209434 - Homo sapiens mRNA for BRUNO-like 6 RNA-binding protein variant protein.
AF087959 - Homo sapiens full length insert cDNA clone YR28G06.
JD414977 - Sequence 396001 from Patent EP1572962.
JD312197 - Sequence 293221 from Patent EP1572962.
JD219121 - Sequence 200145 from Patent EP1572962.
JD274862 - Sequence 255886 from Patent EP1572962.
M13520 - Human alpha-polypeptide of N-acetyl-alpha-glucosaminidase (HEXA), mRNA, 3'end.
JD290215 - Sequence 271239 from Patent EP1572962.
JD416583 - Sequence 397607 from Patent EP1572962.
JD099534 - Sequence 80558 from Patent EP1572962.
JD278867 - Sequence 259891 from Patent EP1572962.
JD541098 - Sequence 522122 from Patent EP1572962.
JD182961 - Sequence 163985 from Patent EP1572962.
JD514226 - Sequence 495250 from Patent EP1572962.
JD382173 - Sequence 363197 from Patent EP1572962.
JD350387 - Sequence 331411 from Patent EP1572962.
JD195517 - Sequence 176541 from Patent EP1572962.
JD500850 - Sequence 481874 from Patent EP1572962.
JD509554 - Sequence 490578 from Patent EP1572962.
JD321388 - Sequence 302412 from Patent EP1572962.
JD348501 - Sequence 329525 from Patent EP1572962.
JD317421 - Sequence 298445 from Patent EP1572962.
JD473481 - Sequence 454505 from Patent EP1572962.
JD343539 - Sequence 324563 from Patent EP1572962.
JD045443 - Sequence 26467 from Patent EP1572962.
JD104140 - Sequence 85164 from Patent EP1572962.
BC001138 - Homo sapiens hexosaminidase A (alpha polypeptide), mRNA (cDNA clone IMAGE:2989846), partial cds.
BC018927 - Homo sapiens hexosaminidase A (alpha polypeptide), mRNA (cDNA clone MGC:14125 IMAGE:3353424), complete cds.
LF208527 - JP 2014500723-A/16030: Polycomb-Associated Non-Coding RNAs.
CR627386 - Homo sapiens mRNA; cDNA DKFZp781C13106 (from clone DKFZp781C13106).
BC084537 - Homo sapiens hexosaminidase A (alpha polypeptide), mRNA (cDNA clone MGC:99608 IMAGE:5459166), complete cds.
AK222502 - Homo sapiens mRNA for hexosaminidase A preproprotein variant, clone: adSE00402.
LF377350 - JP 2014500723-A/184853: Polycomb-Associated Non-Coding RNAs.
AK301000 - Homo sapiens cDNA FLJ53927 complete cds, highly similar to Beta-hexosaminidase alpha chain precursor (EC 3.2.1.52).
JD191755 - Sequence 172779 from Patent EP1572962.
JD213630 - Sequence 194654 from Patent EP1572962.
JD342596 - Sequence 323620 from Patent EP1572962.
JD108168 - Sequence 89192 from Patent EP1572962.
JD468076 - Sequence 449100 from Patent EP1572962.
JD495847 - Sequence 476871 from Patent EP1572962.
KJ896965 - Synthetic construct Homo sapiens clone ccsbBroadEn_06359 HEXA gene, encodes complete protein.
KR710349 - Synthetic construct Homo sapiens clone CCSBHm_00011715 HEXA (HEXA) mRNA, encodes complete protein.
KR710350 - Synthetic construct Homo sapiens clone CCSBHm_00011728 HEXA (HEXA) mRNA, encodes complete protein.
KR710351 - Synthetic construct Homo sapiens clone CCSBHm_00011753 HEXA (HEXA) mRNA, encodes complete protein.
KR710352 - Synthetic construct Homo sapiens clone CCSBHm_00011776 HEXA (HEXA) mRNA, encodes complete protein.
DQ892696 - Synthetic construct clone IMAGE:100005326; FLH190840.01X; RZPDo839E0776D hexosaminidase A (alpha polypeptide) (HEXA) gene, encodes complete protein.
EU176728 - Synthetic construct Homo sapiens clone IMAGE:100011665; FLH264098.01L; RZPDo839H04257D hexosaminidase A (alpha polypeptide) (HEXA) gene, encodes complete protein.
KU178109 - Homo sapiens hexosaminidase A isoform 1 (HEXA) mRNA, partial cds.
KU178110 - Homo sapiens hexosaminidase A isoform 2 (HEXA) mRNA, complete cds, alternatively spliced.
KU178111 - Homo sapiens hexosaminidase A isoform 3 (HEXA) mRNA, partial cds, alternatively spliced.
KU178112 - Homo sapiens hexosaminidase A isoform 4 (HEXA) mRNA, partial cds, alternatively spliced.
KU178113 - Homo sapiens hexosaminidase A isoform 5 (HEXA) mRNA, partial cds, alternatively spliced.
AK296528 - Homo sapiens cDNA FLJ60630 complete cds, highly similar to Beta-hexosaminidase alpha chain precursor (EC 3.2.1.52).
J04178 - Human abnormal beta-hexosaminidase alpha chain (HEXA) mRNA, partial cds.
BX537989 - Homo sapiens mRNA; cDNA DKFZp686A148 (from clone DKFZp686A148).
AK307770 - Homo sapiens cDNA, FLJ97718.
LF377349 - JP 2014500723-A/184852: Polycomb-Associated Non-Coding RNAs.
AK297678 - Homo sapiens cDNA FLJ60712 complete cds, moderately similar to Beta-hexosaminidase alpha chain precursor (EC 3.2.1.52).
AK301138 - Homo sapiens cDNA FLJ50884 complete cds, highly similar to Beta-hexosaminidase alpha chain precursor (EC 3.2.1.52).
AK310154 - Homo sapiens cDNA, FLJ17196.
LF377348 - JP 2014500723-A/184851: Polycomb-Associated Non-Coding RNAs.
S76982 - HEXA {HEXAdeltass mutation, exon 11} [human, Tay-Sachs disease patient, mRNA Partial Mutant, 80 nt].
S76984 - HEXA {HEXA4bpDeltass mutation, exon 11} [human, Tay-Sachs disease patient, mRNA Partial Mutant, 84 nt].
S77043 - HEXA {HEXA4bp mutation, exon 11} [human, Tay-Sachs disease patient, mRNA Partial Mutant, 84 nt].
S76980 - HEXA {HEXA4bpDeltaA mutation, exon 11} [human, Tay-Sachs disease patient, mRNA Partial Mutant, 78 nt].
LF377346 - JP 2014500723-A/184849: Polycomb-Associated Non-Coding RNAs.
LF377345 - JP 2014500723-A/184848: Polycomb-Associated Non-Coding RNAs.
LF377344 - JP 2014500723-A/184847: Polycomb-Associated Non-Coding RNAs.
LF377343 - JP 2014500723-A/184846: Polycomb-Associated Non-Coding RNAs.
CU676336 - Synthetic construct Homo sapiens gateway clone IMAGE:100019791 5' read HEXA mRNA.
LF377342 - JP 2014500723-A/184845: Polycomb-Associated Non-Coding RNAs.
LF377341 - JP 2014500723-A/184844: Polycomb-Associated Non-Coding RNAs.
S61298 - HEXA=beta-hexosaminidase {exon 4/5} [human, fibroblasts, mRNA Partial Mutant, 64 nt].
LF377338 - JP 2014500723-A/184841: Polycomb-Associated Non-Coding RNAs.
MA444104 - JP 2018138019-A/16030: Polycomb-Associated Non-Coding RNAs.
MA612927 - JP 2018138019-A/184853: Polycomb-Associated Non-Coding RNAs.
MA612926 - JP 2018138019-A/184852: Polycomb-Associated Non-Coding RNAs.
MA612925 - JP 2018138019-A/184851: Polycomb-Associated Non-Coding RNAs.
MA612923 - JP 2018138019-A/184849: Polycomb-Associated Non-Coding RNAs.
MA612922 - JP 2018138019-A/184848: Polycomb-Associated Non-Coding RNAs.
MA612921 - JP 2018138019-A/184847: Polycomb-Associated Non-Coding RNAs.
MA612920 - JP 2018138019-A/184846: Polycomb-Associated Non-Coding RNAs.
MA612919 - JP 2018138019-A/184845: Polycomb-Associated Non-Coding RNAs.
MA612918 - JP 2018138019-A/184844: Polycomb-Associated Non-Coding RNAs.
MA612915 - JP 2018138019-A/184841: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P06865 (Reactome details) participates in the following event(s):

R-HSA-1605632 Both hexosaminidase A and B can cleave GalNAc from globoside
R-HSA-1605595 Hexosaminidase A cleaves GalNAc from GM2 to form GM3
R-HSA-1638053 HEXA,B cleave the terminal GalNAc from keratan sulfate
R-HSA-2105001 HEXA,B cleaves the terminal GalNAc from DS
R-HSA-2162225 HEXA,B cleave the terminal GalNAc from small HA fragments
R-HSA-1660662 Glycosphingolipid metabolism
R-HSA-2022857 Keratan sulfate degradation
R-HSA-2024101 CS/DS degradation
R-HSA-2160916 Hyaluronan uptake and degradation
R-HSA-428157 Sphingolipid metabolism
R-HSA-1638074 Keratan sulfate/keratin metabolism
R-HSA-1793185 Chondroitin sulfate/dermatan sulfate metabolism
R-HSA-2142845 Hyaluronan metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-1430728 Metabolism
R-HSA-71387 Metabolism of carbohydrates

-  Other Names for This Gene
  Alternate Gene Symbols: B4DKE7, E7ENH7, ENST00000268097.1, ENST00000268097.2, ENST00000268097.3, ENST00000268097.4, ENST00000268097.5, ENST00000268097.6, ENST00000268097.7, ENST00000268097.8, ENST00000268097.9, HEXA , HEXA_HUMAN, NM_000520, P06865, Q53HS8, Q6AI32, uc317imq.1, uc317imq.2
UCSC ID: ENST00000268097.10_10
RefSeq Accession: NM_000520.6
Protein: P06865 (aka HEXA_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene HEXA:
tay-sachs (HEXA Disorders)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.