Human Gene HIF1AN (ENST00000299163.7_4) from GENCODE V47lift37
  Description: hypoxia inducible factor 1 subunit alpha inhibitor (from RefSeq NM_017902.3)
Gencode Transcript: ENST00000299163.7_4
Gencode Gene: ENSG00000166135.14_7
Transcript (Including UTRs)
   Position: hg19 chr10:102,295,700-102,319,755 Size: 24,056 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr10:102,295,716-102,307,894 Size: 12,179 Coding Exon Count: 8 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:102,295,700-102,319,755)mRNA (may differ from genome)Protein (349 aa)
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-  Comments and Description Text from UniProtKB
  ID: HIF1N_HUMAN
DESCRIPTION: RecName: Full=Hypoxia-inducible factor 1-alpha inhibitor; EC=1.14.11.30; EC=1.14.11.n4; AltName: Full=Factor inhibiting HIF-1; Short=FIH-1; AltName: Full=Hypoxia-inducible factor asparagine hydroxylase;
FUNCTION: Hydroxylates HIF-1 alpha at 'Asp-803' in the C-terminal transactivation domain (CAD). Functions as an oxygen sensor and, under normoxic conditions, the hydroxylation prevents interaction of HIF-1 with transcriptional coactivators including Cbp/p300- interacting transactivator. Involved in transcriptional repression through interaction with HIF1A, VHL and histone deacetylases. Hydroxylates specific Asn residues within ankyrin repeat domains (ARD) of NFKB1, NFKBIA, NOTCH1, ASB4, PPP1R12A and several other ARD-containing proteins. Also hydroxylates Asp and His residues within ARDs of ANK1 and TNKS2, respectively. Negatively regulates NOTCH1 activity, accelerating myogenic differentiation. Positively regulates ASB4 activity, promoting vascular differentiation.
CATALYTIC ACTIVITY: Hypoxia-inducible factor-L-asparagine + 2- oxoglutarate + O(2) = hypoxia-inducible factor-(3S)-3-hydroxy-L- asparagine + succinate + CO(2).
CATALYTIC ACTIVITY: Ankyrin-repeat-L-histidine + 2-oxoglutarate + O(2) = ankyrin-repeat-(3S)-3-hydroxy-L-histidine + succinate + CO(2).
COFACTOR: Fe(2+) ion.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=100 uM for HIF1A (788-822) peptide; KM=160 uM for HIF2A (832-866) peptide; KM=0.5 uM for Fe(2+); KM=25 uM for 2-oxoglutarate; KM=260 uM for ascorbate; KM=90 uM for O(2); Note=The kinetic constants are determined for the recombinant FLAG-His-tagged protein;
SUBUNIT: Homodimer; homodimerization is essential for catalytic activity. Interacts with VHL and HIF1A. Part of a complex with VHL, HIF1A and HDAC1 or HDAC2 or HDAC3. Interacts with NFKB1 and NFKBIA. Interacts with NOTCH1, NOTCH2 and NOTCH3 but not with NOTCH4. Interacts with APBA3; binding inhibits HIF1AN binding to HIF1A. Interacts with TNKS2. Interacts with PPP1R12A. Interacts with ASB4 (By similarity). Interacts with UBE3A.
INTERACTION: Q96DX5:ASB9; NbExp=3; IntAct=EBI-745632, EBI-745641; Q16665:HIF1A; NbExp=3; IntAct=EBI-745632, EBI-447269;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Cytoplasm, perinuclear region. Note=Mainly cytoplasmic localization, but interaction with NOTCH1 results in nuclear localization and interaction with ABPA3 results in perinuclear localization in macrophages.
MASS SPECTROMETRY: Mass=40566; Method=Electrospray; Range=1-349; Source=PubMed:15239670;
SIMILARITY: Contains 1 JmjC domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HIF1AN
Diseases sorted by gene-association score: hypoxia (31), anemia of prematurity (8), acute mountain sickness (6), severe pre-eclampsia (6), renal cell carcinoma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.21 RPKM in Muscle - Skeletal
Total median expression: 244.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.7016-0.106 Picture PostScript Text
3' UTR -4281.6011861-0.361 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003347 - JmjC_dom

Pfam Domains:
PF08007 - Cupin superfamily protein
PF13621 - Cupin-like domain

SCOP Domains:
51182 - RmlC-like cupins
51197 - Clavaminate synthase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1H2K - X-ray MuPIT 1H2L - X-ray MuPIT 1H2M - X-ray MuPIT 1H2N - X-ray MuPIT 1IZ3 - X-ray MuPIT 1MZE - X-ray MuPIT 1MZF - X-ray MuPIT 1YCI - X-ray MuPIT 2CGN - X-ray MuPIT 2CGO - X-ray MuPIT 2ILM - X-ray MuPIT 2W0X - X-ray MuPIT 2WA3 - X-ray MuPIT 2WA4 - X-ray MuPIT 2XUM - X-ray MuPIT 2Y0I - X-ray MuPIT 2YC0 - X-ray MuPIT 2YDE - X-ray MuPIT 3D8C - X-ray MuPIT 3KCX - X-ray MuPIT 3KCY - X-ray MuPIT 3OD4 - X-ray MuPIT 3P3N - X-ray MuPIT 3P3P - X-ray MuPIT 4AI8 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NWT6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005112 Notch binding
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016491 oxidoreductase activity
GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019826 oxygen sensor activity
GO:0031406 carboxylic acid binding
GO:0036139 peptidyl-histidine dioxygenase activity
GO:0036140 peptidyl-asparagine 3-dioxygenase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0048037 cofactor binding
GO:0051059 NF-kappaB binding
GO:0051213 dioxygenase activity
GO:0071532 ankyrin repeat binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0036138 peptidyl-histidine hydroxylation
GO:0042264 peptidyl-aspartic acid hydroxylation
GO:0042265 peptidyl-asparagine hydroxylation
GO:0045663 positive regulation of myoblast differentiation
GO:0045746 negative regulation of Notch signaling pathway
GO:0055114 oxidation-reduction process
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:2001214 positive regulation of vasculogenesis

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK295353 - Homo sapiens cDNA FLJ60091 complete cds, highly similar to Hypoxia-inducible factor 1 alpha inhibitor(EC 1.14.11.16).
AK000622 - Homo sapiens cDNA FLJ20615 fis, clone KAT05373.
LP895203 - Sequence 67 from Patent EP3253886.
AF395830 - Homo sapiens factor inhibiting HIF1 (FIH1) mRNA, complete cds.
BC007719 - Homo sapiens hypoxia inducible factor 1, alpha subunit inhibitor, mRNA (cDNA clone MGC:12605 IMAGE:4138066), complete cds.
AB528628 - Synthetic construct DNA, clone: pF1KB6448, Homo sapiens HIF1AN gene for hypoxia inducible factor 1, alpha subunit inhibitor, without stop codon, in Flexi system.
DQ896013 - Synthetic construct Homo sapiens clone IMAGE:100010473; FLH189494.01L; RZPDo839F1064D hypoxia-inducible factor 1, alpha subunit inhibitor (HIF1AN) gene, encodes complete protein.
KJ894231 - Synthetic construct Homo sapiens clone ccsbBroadEn_03625 HIF1AN gene, encodes complete protein.
KR710055 - Synthetic construct Homo sapiens clone CCSBHm_00009254 HIF1AN (HIF1AN) mRNA, encodes complete protein.
DQ892767 - Synthetic construct clone IMAGE:100005397; FLH189498.01X; RZPDo839F1074D hypoxia-inducible factor 1, alpha subunit inhibitor (HIF1AN) gene, encodes complete protein.
JD025575 - Sequence 6599 from Patent EP1572962.
AL359615 - Homo sapiens mRNA; cDNA DKFZp762F1811 (from clone DKFZp762F1811).
JD028219 - Sequence 9243 from Patent EP1572962.
AK025680 - Homo sapiens cDNA: FLJ22027 fis, clone HEP08551.
BC015574 - Homo sapiens hypoxia-inducible factor 1, alpha subunit inhibitor, mRNA (cDNA clone IMAGE:3928478), partial cds.
JD429056 - Sequence 410080 from Patent EP1572962.
JD560411 - Sequence 541435 from Patent EP1572962.
JD516203 - Sequence 497227 from Patent EP1572962.
JD394228 - Sequence 375252 from Patent EP1572962.
JD548500 - Sequence 529524 from Patent EP1572962.
JD282288 - Sequence 263312 from Patent EP1572962.
JD549107 - Sequence 530131 from Patent EP1572962.
JD377835 - Sequence 358859 from Patent EP1572962.
JD555138 - Sequence 536162 from Patent EP1572962.
JD210744 - Sequence 191768 from Patent EP1572962.
JD192249 - Sequence 173273 from Patent EP1572962.
JD510538 - Sequence 491562 from Patent EP1572962.
JD174166 - Sequence 155190 from Patent EP1572962.
JD381588 - Sequence 362612 from Patent EP1572962.
JD357041 - Sequence 338065 from Patent EP1572962.
JD242274 - Sequence 223298 from Patent EP1572962.
JD334942 - Sequence 315966 from Patent EP1572962.
JD235709 - Sequence 216733 from Patent EP1572962.
JD019450 - Sequence 474 from Patent EP1572962.
JD072689 - Sequence 53713 from Patent EP1572962.
JD417927 - Sequence 398951 from Patent EP1572962.
JD032142 - Sequence 13166 from Patent EP1572962.
JD549315 - Sequence 530339 from Patent EP1572962.
JD285990 - Sequence 267014 from Patent EP1572962.
JD498144 - Sequence 479168 from Patent EP1572962.
JD455660 - Sequence 436684 from Patent EP1572962.
JD197216 - Sequence 178240 from Patent EP1572962.
JD464500 - Sequence 445524 from Patent EP1572962.
JD118690 - Sequence 99714 from Patent EP1572962.
JD267433 - Sequence 248457 from Patent EP1572962.
JD147697 - Sequence 128721 from Patent EP1572962.
JD538441 - Sequence 519465 from Patent EP1572962.
JD169507 - Sequence 150531 from Patent EP1572962.
JD041611 - Sequence 22635 from Patent EP1572962.
JD401890 - Sequence 382914 from Patent EP1572962.
JD109353 - Sequence 90377 from Patent EP1572962.
JD232665 - Sequence 213689 from Patent EP1572962.
JD228493 - Sequence 209517 from Patent EP1572962.
JD246479 - Sequence 227503 from Patent EP1572962.
JD563313 - Sequence 544337 from Patent EP1572962.
JD392401 - Sequence 373425 from Patent EP1572962.
JD530361 - Sequence 511385 from Patent EP1572962.
JD267889 - Sequence 248913 from Patent EP1572962.
JD223835 - Sequence 204859 from Patent EP1572962.
JD144747 - Sequence 125771 from Patent EP1572962.
JD112507 - Sequence 93531 from Patent EP1572962.
JD447199 - Sequence 428223 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NWT6 (Reactome details) participates in the following event(s):

R-HSA-1234164 Cytosolic hydroxylation of asparagine residue in HIF alpha
R-HSA-1234162 Oxygen-dependent asparagine hydroxylation of Hypoxia-inducible Factor Alpha
R-HSA-1234174 Regulation of Hypoxia-inducible Factor (HIF) by oxygen
R-HSA-2262749 Cellular response to hypoxia
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: D3DR69, ENST00000299163.1, ENST00000299163.2, ENST00000299163.3, ENST00000299163.4, ENST00000299163.5, ENST00000299163.6, FIH1, HIF1N_HUMAN, NM_017902, Q5W147, Q969Q7, Q9NPV5, Q9NWT6, uc317mht.1, uc317mht.2
UCSC ID: ENST00000299163.7_4
RefSeq Accession: NM_017902.3
Protein: Q9NWT6 (aka HIF1N_HUMAN or HIFN_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.