Human Gene HINFP (ENST00000350777.7_7) from GENCODE V47lift37
  Description: histone H4 transcription factor, transcript variant 2 (from RefSeq NM_198971.3)
Gencode Transcript: ENST00000350777.7_7
Gencode Gene: ENSG00000172273.13_13
Transcript (Including UTRs)
   Position: hg19 chr11:118,992,290-119,006,769 Size: 14,480 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr11:118,997,655-119,005,208 Size: 7,554 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:118,992,290-119,006,769)mRNA (may differ from genome)Protein (517 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HINFP_HUMAN
DESCRIPTION: RecName: Full=Histone H4 transcription factor; AltName: Full=Histone nuclear factor P; Short=HiNF-P; AltName: Full=MBD2-interacting zinc finger protein; AltName: Full=Methyl-CpG-binding protein 2-interacting zinc finger protein;
FUNCTION: Transcriptional repressor that binds to the consensus sequence 5'-CGGACGTT-3' and to the RB1 promoter. Transcriptional activator that promotes histone H4 gene transcription at the G1/S phase transition in conjunction with NPAT. Also activates transcription of the ATM and PRKDC genes. Autoregulates its expression by associating with its own promoter.
SUBUNIT: Binds MBD2 and a histone deacetylase complex. Interacts with NPAT.
SUBCELLULAR LOCATION: Nucleus. Note=Associated with discrete nuclear foci.
TISSUE SPECIFICITY: Ubiquitous. Highly expressed in brain, heart, skeletal muscle, spleen, kidney, small intestine, placenta and liver.
PTM: Ubiquitinated. Ubiquitination may lead to proteasome-mediated degradation.
SIMILARITY: Contains 9 C2H2-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.74 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 191.28 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.0070-0.271 Picture PostScript Text
3' UTR -538.701561-0.345 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF13894 - C2H2-type zinc finger
PF13912 - C2H2-type zinc finger
PF13913 - zinc-finger of a C2HC-type

SCOP Domains:
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on Q9BQA5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0019899 enzyme binding
GO:0042393 histone binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0000077 DNA damage checkpoint
GO:0000082 G1/S transition of mitotic cell cycle
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001701 in utero embryonic development
GO:0006281 DNA repair
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0010468 regulation of gene expression
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0045184 establishment of protein localization
GO:0045445 myoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0015030 Cajal body
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  LF384541 - JP 2014500723-A/192044: Polycomb-Associated Non-Coding RNAs.
AK300288 - Homo sapiens cDNA FLJ58424 complete cds, highly similar to MBD2-interacting zinc finger protein.
BC017234 - Homo sapiens histone H4 transcription factor, mRNA (cDNA clone MGC:19719 IMAGE:3537381), complete cds.
AK056362 - Homo sapiens cDNA FLJ31800 fis, clone NT2RI2009065, highly similar to MBD2-interacting zinc finger protein.
BC012856 - Homo sapiens histone H4 transcription factor, mRNA (cDNA clone MGC:21493 IMAGE:3871231), complete cds.
AK301452 - Homo sapiens cDNA FLJ58332 complete cds, highly similar to MBD2-interacting zinc finger protein.
BC001073 - Homo sapiens histone H4 transcription factor, mRNA (cDNA clone MGC:2692 IMAGE:2820431), complete cds.
BC001945 - Homo sapiens histone H4 transcription factor, mRNA (cDNA clone MGC:4317 IMAGE:2820431), complete cds.
DQ894647 - Synthetic construct Homo sapiens clone IMAGE:100009107; FLH177196.01L; RZPDo839E05123D MBD2-interacting zinc finger (MIZF) gene, encodes complete protein.
CU680418 - Synthetic construct Homo sapiens gateway clone IMAGE:100019753 5' read MIZF mRNA.
KJ898581 - Synthetic construct Homo sapiens clone ccsbBroadEn_07975 HINFP gene, encodes complete protein.
AK092869 - Homo sapiens cDNA FLJ35550 fis, clone SPLEN2004220, weakly similar to TRANSCRIPTIONAL REPRESSOR CTCF.
AX747779 - Sequence 1304 from Patent EP1308459.
AL080201 - Homo sapiens mRNA; cDNA DKFZp434F162 (from clone DKFZp434F162).
JD382839 - Sequence 363863 from Patent EP1572962.
JD369583 - Sequence 350607 from Patent EP1572962.
JD442600 - Sequence 423624 from Patent EP1572962.
JD227153 - Sequence 208177 from Patent EP1572962.
JD138094 - Sequence 119118 from Patent EP1572962.
JD404186 - Sequence 385210 from Patent EP1572962.
DQ593926 - Homo sapiens piRNA piR-60038, complete sequence.
JD109226 - Sequence 90250 from Patent EP1572962.
JD109227 - Sequence 90251 from Patent EP1572962.
JD511665 - Sequence 492689 from Patent EP1572962.
JD257647 - Sequence 238671 from Patent EP1572962.
JD143984 - Sequence 125008 from Patent EP1572962.
JD230016 - Sequence 211040 from Patent EP1572962.
JD269572 - Sequence 250596 from Patent EP1572962.
JD059713 - Sequence 40737 from Patent EP1572962.
JD155803 - Sequence 136827 from Patent EP1572962.
JD534753 - Sequence 515777 from Patent EP1572962.
JD366271 - Sequence 347295 from Patent EP1572962.
JD517378 - Sequence 498402 from Patent EP1572962.
JD105765 - Sequence 86789 from Patent EP1572962.
MA620118 - JP 2018138019-A/192044: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KPH6, B4DWB4, E9PQF4, ENST00000350777.1, ENST00000350777.2, ENST00000350777.3, ENST00000350777.4, ENST00000350777.5, ENST00000350777.6, HINFP_HUMAN, MIZF, NM_198971, Q96E65, Q9BQA5, Q9Y4M7, uc317yai.1, uc317yai.2, ZNF743
UCSC ID: ENST00000350777.7_7
RefSeq Accession: NM_198971.3
Protein: Q9BQA5 (aka HINFP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.