Human Gene HOOK2 (ENST00000397668.8_11) from GENCODE V47lift37
  Description: hook microtubule tethering protein 2, transcript variant 1 (from RefSeq NM_013312.3)
Gencode Transcript: ENST00000397668.8_11
Gencode Gene: ENSG00000095066.12_20
Transcript (Including UTRs)
   Position: hg19 chr19:12,873,817-12,886,366 Size: 12,550 Total Exon Count: 23 Strand: -
Coding Region
   Position: hg19 chr19:12,874,096-12,886,263 Size: 12,168 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:12,873,817-12,886,366)mRNA (may differ from genome)Protein (719 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HOOK2_HUMAN
DESCRIPTION: RecName: Full=Protein Hook homolog 2; Short=h-hook2; Short=hHK2;
FUNCTION: Component of the FTS/Hook/FHIP complex (FHF complex). The FHF complex may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting complex (the HOPS complex). Contributes to the establishment and maintenance of centrosome function. May function in the positioning or formation of aggresomes, which are pericentriolar accumulations of misfolded proteins, proteasomes and chaperones.
SUBUNIT: Self-associates. Component of the FTS/Hook/FHIP complex (FHF complex), composed of AKTIP/FTS, FAM160A2, and one or more members of the Hook family of proteins HOOK1, HOOK2, and HOOK3. May interact directly with AKTIP/FTS, HOOK1 and HOOK3. Associates with several subunits of the homotypic vesicular sorting complex (the HOPS complex) including VPS16 and VPS41; these interactions may be indirect. Interacts with CEP110. Interacts with microtubules. Interacts with ZC3H14.
INTERACTION: Q8N5R6:CCDC33; NbExp=2; IntAct=EBI-743290, EBI-740841;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Cytoplasm. Cytoplasm, cytoskeleton. Note=Colocalizes with aggresomes, which are aggregates of misfolded proteins, at the centrosome. Also localizes to punctate cytoplasmic foci which do not appear to overlap with early or late endosomes, the endoplasmic reticulum, the Golgi complex, multivesicular bodies (MVBs), lysosomes, or mitochondria. Often found in close association with microtubules.
SIMILARITY: Belongs to the hook family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 56.84 RPKM in Pituitary
Total median expression: 649.47 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.20103-0.536 Picture PostScript Text
3' UTR -99.00279-0.355 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008636 - HOOK

Pfam Domains:
PF05622 - HOOK protein coiled-coil region
PF19047 - HOOK domain

SCOP Domains:
116907 - Hook domain

ModBase Predicted Comparative 3D Structure on Q96ED9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0042802 identical protein binding
GO:0051959 dynein light intermediate chain binding

Biological Process:
GO:0006897 endocytosis
GO:0007032 endosome organization
GO:0007040 lysosome organization
GO:0008333 endosome to lysosome transport
GO:0015031 protein transport
GO:0030705 cytoskeleton-dependent intracellular transport
GO:0031122 cytoplasmic microtubule organization
GO:0045022 early endosome to late endosome transport

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0043231 intracellular membrane-bounded organelle
GO:0070695 FHF complex
GO:0030897 HOPS complex


-  Descriptions from all associated GenBank mRNAs
  LF208189 - JP 2014500723-A/15692: Polycomb-Associated Non-Coding RNAs.
AF044924 - Homo sapiens hook2 protein (HOOK2) mRNA, complete cds.
BC012443 - Homo sapiens hook homolog 2 (Drosophila), mRNA (cDNA clone MGC:8882 IMAGE:3859634), complete cds.
JD445759 - Sequence 426783 from Patent EP1572962.
JD481829 - Sequence 462853 from Patent EP1572962.
JD066759 - Sequence 47783 from Patent EP1572962.
JD555031 - Sequence 536055 from Patent EP1572962.
JD088668 - Sequence 69692 from Patent EP1572962.
JD179587 - Sequence 160611 from Patent EP1572962.
JD218628 - Sequence 199652 from Patent EP1572962.
JD478726 - Sequence 459750 from Patent EP1572962.
JD047091 - Sequence 28115 from Patent EP1572962.
KJ898743 - Synthetic construct Homo sapiens clone ccsbBroadEn_08137 HOOK2 gene, encodes complete protein.
DQ891339 - Synthetic construct clone IMAGE:100003969; FLH171215.01X; RZPDo839G11100D hook homolog 2 (Drosophila) (HOOK2) gene, encodes complete protein.
DQ893360 - Synthetic construct clone IMAGE:100005990; FLH196589.01X; RZPDo839F07156D hook homolog 2 (Drosophila) (HOOK2) gene, encodes complete protein.
DQ894521 - Synthetic construct Homo sapiens clone IMAGE:100008981; FLH171211.01L; RZPDo839G1199D hook homolog 2 (Drosophila) (HOOK2) gene, encodes complete protein.
DQ896679 - Synthetic construct Homo sapiens clone IMAGE:100011139; FLH196585.01L; RZPDo839F07155D hook homolog 2 (Drosophila) (HOOK2) gene, encodes complete protein.
AB527820 - Synthetic construct DNA, clone: pF1KB5710, Homo sapiens HOOK2 gene for hook homolog 2, without stop codon, in Flexi system.
AK129729 - Homo sapiens cDNA FLJ26218 fis, clone ADG08191.
JD373156 - Sequence 354180 from Patent EP1572962.
LF373352 - JP 2014500723-A/180855: Polycomb-Associated Non-Coding RNAs.
CU680326 - Synthetic construct Homo sapiens gateway clone IMAGE:100017465 5' read HOOK2 mRNA.
LF373350 - JP 2014500723-A/180853: Polycomb-Associated Non-Coding RNAs.
MA608929 - JP 2018138019-A/180855: Polycomb-Associated Non-Coding RNAs.
MA608927 - JP 2018138019-A/180853: Polycomb-Associated Non-Coding RNAs.
MA443766 - JP 2018138019-A/15692: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000397668.1, ENST00000397668.2, ENST00000397668.3, ENST00000397668.4, ENST00000397668.5, ENST00000397668.6, ENST00000397668.7, HOOK2_HUMAN, NM_013312, O60562, Q96ED9, uc318zey.1, uc318zey.2
UCSC ID: ENST00000397668.8_11
RefSeq Accession: NM_013312.3
Protein: Q96ED9 (aka HOOK2_HUMAN or HOK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.