Human Gene HRG (ENST00000232003.5_4) from GENCODE V47lift37
  Description: histidine rich glycoprotein (from RefSeq NM_000412.5)
Gencode Transcript: ENST00000232003.5_4
Gencode Gene: ENSG00000113905.5_7
Transcript (Including UTRs)
   Position: hg19 chr3:186,383,803-186,396,023 Size: 12,221 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr3:186,383,821-186,395,672 Size: 11,852 Coding Exon Count: 7 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:186,383,803-186,396,023)mRNA (may differ from genome)Protein (525 aa)
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-  Comments and Description Text from UniProtKB
  ID: HRG_HUMAN
DESCRIPTION: RecName: Full=Histidine-rich glycoprotein; AltName: Full=Histidine-proline-rich glycoprotein; Short=HPRG; Flags: Precursor;
FUNCTION: Plasma glycoprotein that binds a number of ligands such as heme, heparin, heparan sulfate, thrombospondin, plasminogen, and divalent metal ions. Binds heparin and heparin/glycosaminoglycans in a zinc-dependent manner. Binds heparan sulfate on the surface of liver, lung, kidney and heart endothelial cells. Binds to N-sulfated polysaccharide chains on the surface of liver endothelial cells. Inhibits rosette formation. Acts as an adapter protein and is implicated in regulating many processes such as immune complex and pathogen clearance, cell chemotaxis, cell adhesion, angiogenesis, coagulation and fibrinolysis. Mediates clearance of necrotic cells through enhancing the phagocytosis of necrotic cells in an heparan sulfate-dependent pathway. This process can be regulated by the presence of certain HRG ligands such as heparin and zinc ions. Binds to IgG subclasses of immunoglobins containing kappa and lambda light chains with different affinities regulating their clearance and inhibiting the formation of insoluble immune complexes. Tethers plasminogen to the cell surface. Binds T-cells and alters the cell morphology. Modulates angiogenesis by blocking the CD6-mediated antiangiongenic effect of thrombospondins, THBS1 and THBS2. Acts as a regulator of the vascular endothelial growth factor (VEGF) signaling pathway; inhibits endothelial cell motility by reducing VEGF-induced complex formation between PXN/paxillin and ILK/integrin-linked protein kinase and by promoting inhibition of VEGF-induced tyrosine phosphorylation of focal adhesion kinases and alpha-actinins in endothelial cells. Also plays a role in the regulation of tumor angiogenesis and tumor immune surveillance. Normalizes tumor vessels and promotes antitumor immunity by polarizing tumor-associated macrophages, leading to decreased tumor growth and metastasis.
COFACTOR: Zinc.
SUBUNIT: Interacts (via the HRR domain) with TPM1; the interaction appears to contribute to the antiangiogenic properties of the HRR domain. Interacts with THBS2; the interaction blocks the antiangiogenic effect of THBS2 with CD36 (By similarity). Interacts with THBS1 (via the TSP type I repeats); the interaction blocks the antiangiogenic effect of THBS1 with CD3. Interacts with PLG (via its Kringle domains); the interaction tethers PLG to the cell surface and enhances its activation. Interacts with HPSE; the interaction is enhanced at acidic pH, partially inhibits binding of HPSE to cell surface receptors and modulates its enzymatic activity. Interacts (via the HRR domain) with TMP1; the interaction partially mediates the antiangiogenic properties of HRG. Interacts with kappa and lambda light chains of IgG molecules. Interacts with ATP5A1; the interaction occurs on the surface of T-cells and alters their cell morphology in concert with CONA. Binds IgG molecules containing kappa and lambda light chains and inhibits the formation of insoluble immunoglobulin complexes. Interacts with F12; the interaction, which is enhanced in the presence of zinc ions and inhibited by heparin-binding to HRG, inhibits factor XII autoactivation and contact-initiated coagulation.
INTERACTION: Q96PM5:RCHY1; NbExp=3; IntAct=EBI-3915012, EBI-947779;
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed in macrophages and in malignant cells. Expressed by the liver and secreted in plasma (at protein level).
DOMAIN: The His/Pro-rich (HRR) region contains approximately 12 tandem internal repeats of the 5-residue G[H/P][H/P]PH consensus sequence. HRR binds heparan sulfate and possesses antiangiogenic, antibacterial and antifungal properties through binding Candida cells, and preferentially lysing the ergosterol-containing liposomes at low pH. The tandem repeats also bind divalent metal ions and heme.
DOMAIN: The cystatin domains can also bind heparan sulfate. Binding is enhanced in the presence of zinc ions.
PTM: Proteolytic cleavage produces several HRG fragments which are mostly disulfide-linked and, therefore, not released. Cleavage by plasmin is inhibited in the presence of heparin, zinc ions or in an acidic environment. Cleavage reduces binding of HRG to heparan sulfate, but enhances the ability of HRG to bind and tether plasminogen to the cell surface. On platelet activation, releases a 33 kDa antiangiogenic peptide which encompasses the HRR. Also cleaved in the C-terminal by plasmin.
PTM: N-glycosylated.
DISEASE: Defects in HRG are the cause of thrombophilia due to histidine-rich glycoprotein deficiency (THPH11) [MIM:613116]. A hemostatic disorder characterized by a tendency to thrombosis.
SIMILARITY: Contains 2 cystatin domains.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HRG
Diseases sorted by gene-association score: thrombophilia due to hrg deficiency* (1700), thrombophilia (50), protein c deficiency (10), thrombosis (9), corneal neovascularization (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 361.43 RPKM in Liver
Total median expression: 365.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR 0.00180.000 Picture PostScript Text
3' UTR -69.20351-0.197 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000010 - Prot_inh_cystat
IPR012336 - Thioredoxin-like_fold

Pfam Domains:
PF00031 - Cystatin domain

SCOP Domains:
54403 - Cystatin/monellin

ModBase Predicted Comparative 3D Structure on P04196
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004867 serine-type endopeptidase inhibitor activity
GO:0004869 cysteine-type endopeptidase inhibitor activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0008201 heparin binding
GO:0008270 zinc ion binding
GO:0019865 immunoglobulin binding
GO:0020037 heme binding
GO:0043395 heparan sulfate proteoglycan binding
GO:0046872 metal ion binding

Biological Process:
GO:0001525 angiogenesis
GO:0002576 platelet degranulation
GO:0002839 positive regulation of immune response to tumor cell
GO:0006935 chemotaxis
GO:0007162 negative regulation of cell adhesion
GO:0007596 blood coagulation
GO:0007599 hemostasis
GO:0008285 negative regulation of cell proliferation
GO:0010468 regulation of gene expression
GO:0010543 regulation of platelet activation
GO:0010593 negative regulation of lamellipodium assembly
GO:0010951 negative regulation of endopeptidase activity
GO:0015886 heme transport
GO:0016525 negative regulation of angiogenesis
GO:0030168 platelet activation
GO:0030193 regulation of blood coagulation
GO:0030308 negative regulation of cell growth
GO:0032956 regulation of actin cytoskeleton organization
GO:0033629 negative regulation of cell adhesion mediated by integrin
GO:0042730 fibrinolysis
GO:0043065 positive regulation of apoptotic process
GO:0043254 regulation of protein complex assembly
GO:0043537 negative regulation of blood vessel endothelial cell migration
GO:0050730 regulation of peptidyl-tyrosine phosphorylation
GO:0050832 defense response to fungus
GO:0051715 cytolysis in other organism
GO:0051894 positive regulation of focal adhesion assembly
GO:0051918 negative regulation of fibrinolysis
GO:1900747 negative regulation of vascular endothelial growth factor signaling pathway
GO:2000504 positive regulation of blood vessel remodeling
GO:2001027 negative regulation of endothelial cell chemotaxis

Cellular Component:
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0031093 platelet alpha granule lumen
GO:0036019 endolysosome
GO:0070062 extracellular exosome
GO:0072562 blood microparticle


-  Descriptions from all associated GenBank mRNAs
  AK313381 - Homo sapiens cDNA, FLJ93914, highly similar to Homo sapiens histidine-rich glycoprotein (HRG), mRNA.
BC069574 - Homo sapiens histidine-rich glycoprotein, mRNA (cDNA clone MGC:97078 IMAGE:7262290), complete cds.
BC150591 - Homo sapiens histidine-rich glycoprotein, mRNA (cDNA clone MGC:183501 IMAGE:9056961), complete cds.
M13149 - Human histidine-rich glycoprotein mRNA, complete cds.
KJ891393 - Synthetic construct Homo sapiens clone ccsbBroadEn_00787 HRG gene, encodes complete protein.
KR711350 - Synthetic construct Homo sapiens clone CCSBHm_00022980 HRG (HRG) mRNA, encodes complete protein.
CR749302 - Homo sapiens mRNA; cDNA DKFZp779H1622 (from clone DKFZp779H1622).

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P04196 (Reactome details) participates in the following event(s):

R-HSA-158722 histidine-rich glycoprotein + plasminogen <-> histidine-rich glycoprotein:plasminogen
R-HSA-158721 histidine-rich glycoprotein:plasminogen <-> histidine-rich glycoprotein + plasminogen
R-HSA-158941 plasminogen + histidine-rich glycoprotein -> plasminogen:histidine-rich glycoprotein
R-HSA-158925 plasminogen:histidine-rich glycoprotein -> plasmin + histidine-rich glycoprotein (uPA [two-chain] catalyst)
R-HSA-158982 plasminogen:histidine-rich glycoprotein -> plasmin + histidine-rich glycoprotein (uPA [one-chain] catalyst)
R-HSA-481007 Exocytosis of platelet alpha granule contents
R-HSA-75205 Dissolution of Fibrin Clot
R-HSA-114608 Platelet degranulation
R-HSA-109582 Hemostasis
R-HSA-76005 Response to elevated platelet cytosolic Ca2+
R-HSA-76002 Platelet activation, signaling and aggregation

-  Other Names for This Gene
  Alternate Gene Symbols: B9EK35, D3DNU7, ENST00000232003.1, ENST00000232003.2, ENST00000232003.3, ENST00000232003.4, HRG_HUMAN, NM_000412, P04196, uc317dve.1, uc317dve.2
UCSC ID: ENST00000232003.5_4
RefSeq Accession: NM_000412.5
Protein: P04196 (aka HRG_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.