Human Gene HRK (ENST00000257572.5_7) from GENCODE V47lift37
  Description: harakiri, BCL2 interacting protein, transcript variant 1 (from RefSeq NM_003806.4)
Gencode Transcript: ENST00000257572.5_7
Gencode Gene: ENSG00000135116.9_18
Transcript (Including UTRs)
   Position: hg19 chr12:117,293,949-117,319,246 Size: 25,298 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr12:117,318,837-117,319,112 Size: 276 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:117,293,949-117,319,246)mRNA (may differ from genome)Protein (91 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HRK_HUMAN
DESCRIPTION: RecName: Full=Activator of apoptosis harakiri; AltName: Full=BH3-interacting domain-containing protein 3; AltName: Full=Neuronal death protein DP5;
FUNCTION: Promotes apoptosis.
SUBUNIT: Interacts with BCL2 and BCL2L1. Interacts with C1QBP.
INTERACTION: Q07817-1:BCL2L1; NbExp=2; IntAct=EBI-701322, EBI-287195;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein. Mitochondrion.
DOMAIN: The BH3 motif is required for the induction of cell death.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HRK
Diseases sorted by gene-association score: chronic gonococcal salpingitis (2), retinitis pigmentosa 20 (2), corneal abscess (2), acute salpingitis (1), chronic salpingitis (1), usher syndrome, type 2d (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.01 RPKM in Brain - Hippocampus
Total median expression: 17.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -53.10134-0.396 Picture PostScript Text
3' UTR -1778.805379-0.331 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017249 - Apoptosis_activator_harakiri
IPR020728 - Bcl2_BH3_motif_CS

Pfam Domains:
PF15196 - Activator of apoptosis harakiri

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2L58 - NMR 2L5B - NMR


ModBase Predicted Comparative 3D Structure on O00198
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006915 apoptotic process
GO:0032464 positive regulation of protein homooligomerization
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0090200 positive regulation of release of cytochrome c from mitochondria

Cellular Component:
GO:0005739 mitochondrion
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  D83699 - Homo sapiens DP5 mRNA, 3'UTR partial sequence.
HH837086 - Sequence 13 from Patent EP2231168.
HI214727 - Sequence 13 from Patent EP2076526.
HV601529 - JP 2011500003-A/13: Novel siRNA Structures.
HV856602 - JP 2010507387-A/13: Novel siRNAs and Methods of Use Thereof.
HW061140 - JP 2012529430-A/15: METHODS FOR TREATING CHRONIC KIDNEY DISEASE.
HW165089 - JP 2013102767-A/13: Novel siRNA's and Use Thereof.
HW675597 - JP 2014210789-A/13: Novel siRNA Structures.
HW835285 - JP 2015051004-A/13: Novel siRNA's and Use Thereof.
JA482095 - Sequence 78 from Patent WO2011072091.
JA538128 - Sequence 13 from Patent EP2371958.
JB251948 - Sequence 15 from Patent EP2440214.
JE980387 - Sequence 78 from Patent EP2862929.
LP764847 - Sequence 15 from Patent EP3276004.
U76376 - Homo sapiens activator of apoptosis Hrk (HRK) mRNA, complete cds.
AK094730 - Homo sapiens cDNA FLJ37411 fis, clone BRAMY2028682.
JD323389 - Sequence 304413 from Patent EP1572962.
JD057433 - Sequence 38457 from Patent EP1572962.
JD325292 - Sequence 306316 from Patent EP1572962.
JD429478 - Sequence 410502 from Patent EP1572962.
JD310823 - Sequence 291847 from Patent EP1572962.
JD496650 - Sequence 477674 from Patent EP1572962.
JD143650 - Sequence 124674 from Patent EP1572962.
JD517048 - Sequence 498072 from Patent EP1572962.
JD090852 - Sequence 71876 from Patent EP1572962.
JD400074 - Sequence 381098 from Patent EP1572962.
JD386168 - Sequence 367192 from Patent EP1572962.
JD357888 - Sequence 338912 from Patent EP1572962.
JD292163 - Sequence 273187 from Patent EP1572962.
JD244878 - Sequence 225902 from Patent EP1572962.
JD199178 - Sequence 180202 from Patent EP1572962.
JD507115 - Sequence 488139 from Patent EP1572962.
JD281294 - Sequence 262318 from Patent EP1572962.
JD188206 - Sequence 169230 from Patent EP1572962.
JD299757 - Sequence 280781 from Patent EP1572962.
JD491818 - Sequence 472842 from Patent EP1572962.
JD093417 - Sequence 74441 from Patent EP1572962.
JD414339 - Sequence 395363 from Patent EP1572962.
JD505304 - Sequence 486328 from Patent EP1572962.
JD091530 - Sequence 72554 from Patent EP1572962.
JD331279 - Sequence 312303 from Patent EP1572962.
JD299392 - Sequence 280416 from Patent EP1572962.
JD490403 - Sequence 471427 from Patent EP1572962.
JD364406 - Sequence 345430 from Patent EP1572962.
JD454173 - Sequence 435197 from Patent EP1572962.
DQ592097 - Homo sapiens piRNA piR-59209, complete sequence.
JD274992 - Sequence 256016 from Patent EP1572962.
JD297426 - Sequence 278450 from Patent EP1572962.
BC111923 - Synthetic construct Homo sapiens clone IMAGE:40080746, MGC:133459 HRK protein (HRK) mRNA, encodes complete protein.
JD065824 - Sequence 46848 from Patent EP1572962.
JD210324 - Sequence 191348 from Patent EP1572962.
JD471923 - Sequence 452947 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BID3, ENST00000257572.1, ENST00000257572.2, ENST00000257572.3, ENST00000257572.4, HRK_HUMAN, NM_003806, O00198, uc317fyq.1, uc317fyq.2
UCSC ID: ENST00000257572.5_7
RefSeq Accession: NM_003806.4
Protein: O00198 (aka HRK_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.