Human Gene HSP90AB1 (ENST00000371646.10_4) from GENCODE V47lift37
  Description: heat shock protein 90 alpha family class B member 1, transcript variant 2 (from RefSeq NM_007355.4)
Gencode Transcript: ENST00000371646.10_4
Gencode Gene: ENSG00000096384.20_7
Transcript (Including UTRs)
   Position: hg19 chr6:44,214,838-44,221,620 Size: 6,783 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr6:44,216,367-44,221,335 Size: 4,969 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:44,214,838-44,221,620)mRNA (may differ from genome)Protein (724 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HS90B_HUMAN
DESCRIPTION: RecName: Full=Heat shock protein HSP 90-beta; Short=HSP 90; AltName: Full=Heat shock 84 kDa; Short=HSP 84; Short=HSP84;
FUNCTION: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
SUBUNIT: Homodimer. Interacts with p53/TP53 (By similarity). Forms a complex with CDK6 and Hsp90/HSP90AB1. Interacts with UNC45A. Binding to UNC45A involves 2 UNC45A monomers per HSP90AB1 dimer. Interacts with CHORDC1 and DNAJC7 (By similarity). Interacts with FKBP4.
INTERACTION: P04049:RAF1; NbExp=2; IntAct=EBI-352572, EBI-365996;
SUBCELLULAR LOCATION: Cytoplasm. Melanosome. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV.
DOMAIN: The TPR repeat-binding motif mediates interaction with TPR repeat-containing proteins (By similarity).
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
PTM: Ubiquitinated in the presence of STUB1-UBE2D1 complex (in vitro).
PTM: ISGylated.
PTM: S-nitrosylated; negatively regulates the ATPase activity (Probable).
SIMILARITY: Belongs to the heat shock protein 90 family.
SEQUENCE CAUTION: Sequence=AAD14062.3; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAB66478.1; Type=Frameshift; Positions=709;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HSP90AB1
Diseases sorted by gene-association score: bronchitis (7), larynx cancer (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 725.24 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 17658.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.5095-0.195 Picture PostScript Text
3' UTR -65.30285-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003594 - ATPase-like_ATP-bd
IPR019805 - Heat_shock_protein_90_CS
IPR001404 - Hsp90
IPR020575 - Hsp90_N
IPR020568 - Ribosomal_S5_D2-typ_fold

Pfam Domains:
PF00183 - Hsp90 protein
PF02518 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF13589 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

SCOP Domains:
102705 - NIF3 (NGG1p interacting factor 3)-like
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
54211 - Ribosomal protein S5 domain 2-like
110942 - HSP90 C-terminal domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1QZ2 - X-ray MuPIT 1UYM - X-ray MuPIT 3NMQ - X-ray MuPIT 3PRY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P08238
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0002134 UTP binding
GO:0002135 CTP binding
GO:0003723 RNA binding
GO:0003725 double-stranded RNA binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005525 GTP binding
GO:0008144 drug binding
GO:0017098 sulfonylurea receptor binding
GO:0019887 protein kinase regulator activity
GO:0019900 kinase binding
GO:0019901 protein kinase binding
GO:0023026 MHC class II protein complex binding
GO:0030235 nitric-oxide synthase regulator activity
GO:0030911 TPR domain binding
GO:0031072 heat shock protein binding
GO:0031625 ubiquitin protein ligase binding
GO:0032564 dATP binding
GO:0042277 peptide binding
GO:0042623 ATPase activity, coupled
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0042826 histone deacetylase binding
GO:0043008 ATP-dependent protein binding
GO:0044325 ion channel binding
GO:0045296 cadherin binding
GO:0046983 protein dimerization activity
GO:0048156 tau protein binding
GO:0051082 unfolded protein binding
GO:0070182 DNA polymerase binding
GO:0097718 disordered domain specific binding
GO:1990226 histone methyltransferase binding

Biological Process:
GO:0001890 placenta development
GO:0006457 protein folding
GO:0006805 xenobiotic metabolic process
GO:0006950 response to stress
GO:0006986 response to unfolded protein
GO:0007004 telomere maintenance via telomerase
GO:0009651 response to salt stress
GO:0010033 response to organic substance
GO:0019062 virion attachment to host cell
GO:0021955 central nervous system neuron axonogenesis
GO:0030010 establishment of cell polarity
GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway
GO:0031396 regulation of protein ubiquitination
GO:0032092 positive regulation of protein binding
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032516 positive regulation of phosphoprotein phosphatase activity
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0033160 positive regulation of protein import into nucleus, translocation
GO:0035690 cellular response to drug
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042220 response to cocaine
GO:0042493 response to drug
GO:0043066 negative regulation of apoptotic process
GO:0043312 neutrophil degranulation
GO:0043524 negative regulation of neuron apoptotic process
GO:0045429 positive regulation of nitric oxide biosynthetic process
GO:0045597 positive regulation of cell differentiation
GO:0045793 positive regulation of cell size
GO:0048675 axon extension
GO:0050821 protein stabilization
GO:0051131 chaperone-mediated protein complex assembly
GO:0051248 negative regulation of protein metabolic process
GO:0051897 positive regulation of protein kinase B signaling
GO:0051973 positive regulation of telomerase activity
GO:0060334 regulation of interferon-gamma-mediated signaling pathway
GO:0060338 regulation of type I interferon-mediated signaling pathway
GO:0071157 negative regulation of cell cycle arrest
GO:0071353 cellular response to interleukin-4
GO:0071407 cellular response to organic cyclic compound
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:0097435 supramolecular fiber organization
GO:1900034 regulation of cellular response to heat
GO:1901389 negative regulation of transforming growth factor beta activation
GO:1901799 negative regulation of proteasomal protein catabolic process
GO:1902949 positive regulation of tau-protein kinase activity
GO:1903660 negative regulation of complement-dependent cytotoxicity
GO:1903827 regulation of cellular protein localization
GO:1904031 positive regulation of cyclin-dependent protein kinase activity
GO:1905323 telomerase holoenzyme complex assembly
GO:2000010 positive regulation of protein localization to cell surface

Cellular Component:
GO:0005576 extracellular region
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005765 lysosomal membrane
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016234 inclusion body
GO:0016323 basolateral plasma membrane
GO:0016324 apical plasma membrane
GO:0031526 brush border membrane
GO:0032991 macromolecular complex
GO:0034751 aryl hydrocarbon receptor complex
GO:0034774 secretory granule lumen
GO:0042470 melanosome
GO:0043025 neuronal cell body
GO:0044294 dendritic growth cone
GO:0044295 axonal growth cone
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome
GO:1904813 ficolin-1-rich granule lumen
GO:1990913 sperm head plasma membrane
GO:1990917 ooplasm
GO:0008180 COP9 signalosome


-  Descriptions from all associated GenBank mRNAs
  BC068474 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:87106 IMAGE:4824686), complete cds.
AK312255 - Homo sapiens cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA.
AY359878 - Homo sapiens heat shock 90kDa protein 1 beta (HSPCB) mRNA, complete cds.
BC016753 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:1138 IMAGE:2987963), complete cds.
D28342 - Homo sapiens mRNA for heat shock protein 90 kDa, 5'UTR region.
AK297367 - Homo sapiens cDNA FLJ54023 complete cds, highly similar to Heat shock protein HSP 90-beta.
AK294643 - Homo sapiens cDNA FLJ53619 complete cds, highly similar to Heat shock protein HSP 90-beta.
BX649079 - Homo sapiens mRNA; cDNA DKFZp779L0656 (from clone DKFZp779L0656).
BC004928 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:10493 IMAGE:3621040), complete cds.
BC012807 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:3483 IMAGE:3530042), complete cds.
M16660 - Human 90-kDa heat-shock protein gene, cDNA, complete cds.
BC014485 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:23206 IMAGE:4870198), complete cds.
BC007327 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone IMAGE:3641489), partial cds.
AL136543 - Homo sapiens mRNA; cDNA DKFZp761K0511 (from clone DKFZp761K0511); partial cds.
CU678814 - Synthetic construct Homo sapiens gateway clone IMAGE:100017785 5' read HSP90AB1 mRNA.
AB385100 - Synthetic construct DNA, clone: pF1KB5444, Homo sapiens HSP90AB1 gene for heat shock protein HSP 90-beta, complete cds, without stop codon, in Flexi system.
DQ896268 - Synthetic construct Homo sapiens clone IMAGE:100010728; FLH191762.01L; RZPDo839G0967D heat shock protein 90kDa alpha (cytosolic), class B member 1 (HSP90AB1) gene, encodes complete protein.
KJ905787 - Synthetic construct Homo sapiens clone ccsbBroadEn_15457 HSP90AB1 gene, encodes complete protein.
KJ891405 - Synthetic construct Homo sapiens clone ccsbBroadEn_00799 HSP90AB1 gene, encodes complete protein.
DQ893024 - Synthetic construct clone IMAGE:100005654; FLH191766.01X; RZPDo839G0977D heat shock protein 90kDa alpha (cytosolic), class B member 1 (HSP90AB1) gene, encodes complete protein.
JD022630 - Sequence 3654 from Patent EP1572962.
JD028903 - Sequence 9927 from Patent EP1572962.
BC009206 - Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone IMAGE:3615632), partial cds.
JD050565 - Sequence 31589 from Patent EP1572962.
AF275719 - Homo sapiens isolate Liv chaperone protein HSP90 beta (HSP90BETA) mRNA, complete cds.
AK025370 - Homo sapiens cDNA: FLJ21717 fis, clone COL10322.
JD443121 - Sequence 424145 from Patent EP1572962.
JD024304 - Sequence 5328 from Patent EP1572962.
JD077609 - Sequence 58633 from Patent EP1572962.
JD267525 - Sequence 248549 from Patent EP1572962.
JD035198 - Sequence 16222 from Patent EP1572962.
JD358327 - Sequence 339351 from Patent EP1572962.
AK290734 - Homo sapiens cDNA FLJ77842 complete cds.
JD062230 - Sequence 43254 from Patent EP1572962.
JD087860 - Sequence 68884 from Patent EP1572962.
JD023879 - Sequence 4903 from Patent EP1572962.
JD464540 - Sequence 445564 from Patent EP1572962.
JD448744 - Sequence 429768 from Patent EP1572962.
JD195481 - Sequence 176505 from Patent EP1572962.
AK130494 - Homo sapiens cDNA FLJ26984 fis, clone SLV03003, highly similar to Heat shock protein HSP 90-beta.
JD526121 - Sequence 507145 from Patent EP1572962.
JD526120 - Sequence 507144 from Patent EP1572962.
JD181377 - Sequence 162401 from Patent EP1572962.
JD232479 - Sequence 213503 from Patent EP1572962.
JD547160 - Sequence 528184 from Patent EP1572962.
JD151685 - Sequence 132709 from Patent EP1572962.
JD493603 - Sequence 474627 from Patent EP1572962.
JD490641 - Sequence 471665 from Patent EP1572962.
JD223502 - Sequence 204526 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P08238 (Reactome details) participates in the following event(s):

R-HSA-874087 SGT1 binds HSP90
R-HSA-873951 SGT1:HSP90 binds inactive NLRP3
R-HSA-8936849 AHR:2xHSP90:AIP:PTGES3 binds TCDD
R-HSA-419645 Dimerization of LIMK1 by Hsp90
R-HSA-8937191 AHR:TCDD:2xHSP90AB1:AIP:PTGES3 dissociates
R-HSA-8939203 HSP90-dependent ATP hydrolysis promotes release of ESR:ESTG from chaperone complex
R-HSA-6798748 Exocytosis of secretory granule lumen proteins
R-HSA-6800434 Exocytosis of ficolin-rich granule lumen proteins
R-HSA-3371503 STIP1(HOP) binds HSP90 and HSP70:HSP40:nascent protein
R-HSA-8852362 GTSE1 binds CDKN1A
R-HSA-3371586 Dissociation of cytosolic HSF1:HSP90 complex
R-HSA-5324632 Dissociation of cytosolic HSF1:HSP90:HDAC6:PTGES3 upon sensing protein aggregates
R-HSA-5082409 Dissociation of HSF1:HSP90 complex in the nucleus
R-HSA-5618107 ATP binding to HSP90 triggers conformation change
R-HSA-5618099 SH binds SHR within the HSP90 chaperone complex
R-HSA-5324617 HSP90:FKBP4:PTGES3 binds HSF1 trimer
R-HSA-5618073 FKBP4 replaces FKBP5 within HSP90:ATP:FKBP5:unfolded protein
R-HSA-5618098 p23 (PTGES3) binds HSP90:ATP:FKBP5:nascent protein
R-HSA-5618110 p23 (PTGES3) binds HSP90:ATP:FKBP4:nascent protein
R-HSA-5618085 FKBP4 binds HSP90:ATP:STIP1:HSP70:nascent protein
R-HSA-5618105 FKBP5 binds HSP90:ATP:STIP1:HSP70:nascent protein
R-HSA-8939204 ESTG binds the ESR:chaperone complex
R-HSA-844456 The NLRP3 inflammasome
R-HSA-8937144 Aryl hydrocarbon receptor signalling
R-HSA-399954 Sema3A PAK dependent Axon repulsion
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation
R-HSA-622312 Inflammasomes
R-HSA-8939211 ESR-mediated signaling
R-HSA-3371571 HSF1-dependent transactivation
R-HSA-6798695 Neutrophil degranulation
R-HSA-3371497 HSP90 chaperone cycle for steroid hormone receptors (SHR)
R-HSA-8852276 The role of GTSE1 in G2/M progression after G2 checkpoint
R-HSA-3371511 HSF1 activation
R-HSA-211945 Phase I - Functionalization of compounds
R-HSA-373755 Semaphorin interactions
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-9018519 Estrogen-dependent gene expression
R-HSA-9006931 Signaling by Nuclear Receptors
R-HSA-3371556 Cellular response to heat stress
R-HSA-168249 Innate Immune System
R-HSA-2262752 Cellular responses to stress
R-HSA-69275 G2/M Transition
R-HSA-211859 Biological oxidations
R-HSA-422475 Axon guidance
R-HSA-3371568 Attenuation phase
R-HSA-162582 Signal Transduction
R-HSA-168256 Immune System
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-1430728 Metabolism
R-HSA-1266738 Developmental Biology
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: B2R5P0, ENST00000371646.1, ENST00000371646.2, ENST00000371646.3, ENST00000371646.4, ENST00000371646.5, ENST00000371646.6, ENST00000371646.7, ENST00000371646.8, ENST00000371646.9, HS90B_HUMAN, HSP90AB1 , HSP90B, HSPC2, HSPCB, NM_007355, P08238, Q5T9W7, Q9NQW0, Q9NTK6, uc318jhi.1, uc318jhi.2
UCSC ID: ENST00000371646.10_4
RefSeq Accession: NM_007355.4
Protein: P08238 (aka HS90B_HUMAN or HS9B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.