Human Gene HTRA1 (ENST00000368984.8_4) from GENCODE V47lift37
  Description: HtrA serine peptidase 1 (from RefSeq NM_002775.5)
Gencode Transcript: ENST00000368984.8_4
Gencode Gene: ENSG00000166033.13_9
Transcript (Including UTRs)
   Position: hg19 chr10:124,221,069-124,274,423 Size: 53,355 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr10:124,221,169-124,273,875 Size: 52,707 Coding Exon Count: 9 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:124,221,069-124,274,423)mRNA (may differ from genome)Protein (480 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HTRA1_HUMAN
DESCRIPTION: RecName: Full=Serine protease HTRA1; EC=3.4.21.-; AltName: Full=High-temperature requirement A serine peptidase 1; AltName: Full=L56; AltName: Full=Serine protease 11; Flags: Precursor;
FUNCTION: Serine protease with a variety of targets, including extracellular matrix proteins such as fibronectin. HTRA1-generated fibronectin fragments further induce synovial cells to up-regulate MMP1 and MMP3 production. May also degrade proteoglycans, such as aggrecan, decorin and fibromodulin. Through cleavage of proteoglycans, may release soluble FGF-glycosaminoglycan complexes that promote the range and intensity of FGF signals in the extracellular space. Regulates the availability of insulin-like growth factors (IGFs) by cleaving IGF-binding proteins. Inhibits signaling mediated by TGF-beta family members. This activity requires the integrity of the catalytic site, although it is unclear whether TGF-beta proteins are themselves degraded. By acting on TGF-beta signaling, may regulate many physiological processes, including retinal angiogenesis and neuronal survival and maturation during development. Intracellularly, degrades TSC2, leading to the activation of TSC2 downstream targets.
SUBUNIT: Forms homotrimers. In the presence of substrate, may form higher-order multimers in a PDZ-independent manner. Interacts with TGF-beta family members, including BMP4, TGFB1, TGFB2, activin A and GDF5 (By similarity).
SUBCELLULAR LOCATION: Secreted. Cytoplasm, cytosol. Note=Predominantly secreted. Also found associated with the plasma membrane.
TISSUE SPECIFICITY: Widely expressed, with strongest expression in placenta (at protein level). Secreted by synovial fibroblasts. Up- regulated in osteoarthritis and rheumatoid arthritis synovial fluids and cartilage as compared with non-arthritic (at protein level).
DEVELOPMENTAL STAGE: In the placenta, in the first trimester of gestation, low expression in the cells surrounding villi both in the inner layer of the cytotrophoblast and in the outer layer of the syncytiotrophoblast (at protein level). In the third trimester of gestation, very strong expression in the outer layer forming the syncytiotrophoblast and lower in the cytotrophoblast (at protein level).
DOMAIN: The IGFBP N-terminal domain mediates interaction with TSC2 substrate.
DISEASE: Variations in the promoter region of HTRA1 are the cause of susceptibility to age-related macular degeneration type 7 (ARMD7) [MIM:610149]. ARMD is the leading cause of vision loss and blindness among older individuals in the developed word. It is classified as either dry (nonneovascular) or wet (neovascular). ARMD7 is a wet form, in which new blood vessels form and break beneath the retina. This leakage causes permanent damage to surrounding retinal tissue, distorting and destroying central vision. Wet ARMD is more prevalent among Asians than Caucasians.
DISEASE: Defects in HTRA1 are the cause of cerebral autosomal recessive arteriopathy with subcortical infarcts and leukoencephalopathy (CARASIL) [MIM:600142]. CARASIL is characterized by nonhypertensive cerebral small-vessel arteriopathy with subcortical infarcts, alopecia, and spondylosis, with an onset in early adulthood. On neuropathological examination, atherosclerosis associated with intimal thickening and dense collagen fibers, loss of vascular smooth-muscle cells, and hyaline degeneration of the tunica media has been observed in cerebral small arteries.
SIMILARITY: Belongs to the peptidase S1B family.
SIMILARITY: Contains 1 IGFBP N-terminal domain.
SIMILARITY: Contains 1 Kazal-like domain.
SIMILARITY: Contains 1 PDZ (DHR) domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/HTRA1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HTRA1
Diseases sorted by gene-association score: carasil syndrome* (1668), cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 2* (1200), macular degeneration, age-related, 7* (694), htra1-related autosomal dominant cerebral small vessel disease* (350), malignant peripheral nerve sheath tumor* (202), macular degeneration, age-related, 1* (38), spotted fever (32), spondylosis (25), cat-scratch disease (25), pseudobulbar palsy (16), post-vaccinal encephalitis (15), eye disease (9), bartonellosis (9), multifocal choroiditis (9), choroiditis (8), arteriolosclerosis (7), leukodystrophy, adult-onset, autosomal dominant (7), cerebral arteriopathy with subcortical infarcts and leukoencephalopathy 1 (7), alopecia (5), degeneration of macula and posterior pole (4), cerebral degeneration (1), bone structure disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 268.57 RPKM in Artery - Aorta
Total median expression: 4653.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.00100-0.260 Picture PostScript Text
3' UTR -155.50548-0.284 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000867 - IGFBP-like
IPR011497 - Kazal-type_dom
IPR001478 - PDZ
IPR009003 - Pept_cys/ser_Trypsin-like
IPR001940 - Peptidase_S1C
IPR002350 - Prot_inh_Kazal

Pfam Domains:
PF00050 - Kazal-type serine protease inhibitor domain
PF00089 - Trypsin
PF00219 - Insulin-like growth factor binding protein
PF00595 - PDZ domain
PF07648 - Kazal-type serine protease inhibitor domain
PF13180 - PDZ domain
PF13365 - Trypsin-like peptidase domain
PF17820 - PDZ domain

SCOP Domains:
50156 - PDZ domain-like
50182 - Sm-like ribonucleoproteins
50494 - Trypsin-like serine proteases
57184 - Growth factor receptor domain
100895 - Kazal-type serine protease inhibitors

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2JOA - NMR MuPIT 2YTW - NMR MuPIT 3NUM - X-ray MuPIT 3NWU - X-ray MuPIT 3NZI - X-ray MuPIT 3TJN - X-ray MuPIT 3TJO - X-ray MuPIT 3TJQ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q92743
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0005515 protein binding
GO:0005520 insulin-like growth factor binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity
GO:0019838 growth factor binding
GO:0042802 identical protein binding

Biological Process:
GO:0001558 regulation of cell growth
GO:0001890 placenta development
GO:0006508 proteolysis
GO:0022617 extracellular matrix disassembly
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 negative regulation of BMP signaling pathway
GO:0050679 positive regulation of epithelial cell proliferation
GO:0050687 negative regulation of defense response to virus
GO:0060718 chorionic trophoblast cell differentiation
GO:0097187 dentinogenesis

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0031012 extracellular matrix
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF207935 - JP 2014500723-A/15438: Polycomb-Associated Non-Coding RNAs.
AK091944 - Homo sapiens cDNA FLJ34625 fis, clone KIDNE2015244, highly similar to Serine protease HTRA1 precursor (EC 3.4.21.-).
AX747270 - Sequence 795 from Patent EP1308459.
AK092476 - Homo sapiens cDNA FLJ35157 fis, clone PLACE6011156, highly similar to Serine protease HTRA1 precursor (EC 3.4.21.-).
AK290089 - Homo sapiens cDNA FLJ78224 complete cds.
BC011352 - Homo sapiens HtrA serine peptidase 1, mRNA (cDNA clone IMAGE:4177882), partial cds.
LF213930 - JP 2014500723-A/21433: Polycomb-Associated Non-Coding RNAs.
D87258 - Homo sapiens mRNA for serin protease with IGF-binding motif, complete cds.
BC031082 - Homo sapiens HtrA serine peptidase 1, mRNA (cDNA clone IMAGE:5289018).
Y07921 - H.sapiens mRNA for serine protease.
AB590567 - Synthetic construct DNA, clone: pFN21AB5246, Homo sapiens HTRA1 gene for HtrA serine peptidase 1, without stop codon, in Flexi system.
BC156552 - Synthetic construct Homo sapiens clone IMAGE:100063230, MGC:190719 HtrA serine peptidase 1 (HTRA1) mRNA, encodes complete protein.
BC172536 - Synthetic construct Homo sapiens clone IMAGE:100069230, MGC:199241 HtrA serine peptidase 1 (HTRA1) mRNA, encodes complete protein.
AF097709 - Homo sapiens serine protease (PRSS11) mRNA, partial cds.
AF070555 - Homo sapiens clone 24795 mRNA sequence.
MA449507 - JP 2018138019-A/21433: Polycomb-Associated Non-Coding RNAs.
MA443512 - JP 2018138019-A/15438: Polycomb-Associated Non-Coding RNAs.
LF212158 - JP 2014500723-A/19661: Polycomb-Associated Non-Coding RNAs.
LF213104 - JP 2014500723-A/20607: Polycomb-Associated Non-Coding RNAs.
LF370146 - JP 2014500723-A/177649: Polycomb-Associated Non-Coding RNAs.
MA605723 - JP 2018138019-A/177649: Polycomb-Associated Non-Coding RNAs.
MA447735 - JP 2018138019-A/19661: Polycomb-Associated Non-Coding RNAs.
MA448681 - JP 2018138019-A/20607: Polycomb-Associated Non-Coding RNAs.
LF370150 - JP 2014500723-A/177653: Polycomb-Associated Non-Coding RNAs.
LF370151 - JP 2014500723-A/177654: Polycomb-Associated Non-Coding RNAs.
LF370152 - JP 2014500723-A/177655: Polycomb-Associated Non-Coding RNAs.
LF370153 - JP 2014500723-A/177656: Polycomb-Associated Non-Coding RNAs.
LF370154 - JP 2014500723-A/177657: Polycomb-Associated Non-Coding RNAs.
JD122453 - Sequence 103477 from Patent EP1572962.
JD396826 - Sequence 377850 from Patent EP1572962.
JD088292 - Sequence 69316 from Patent EP1572962.
LF370155 - JP 2014500723-A/177658: Polycomb-Associated Non-Coding RNAs.
JD280190 - Sequence 261214 from Patent EP1572962.
JD102709 - Sequence 83733 from Patent EP1572962.
LF370156 - JP 2014500723-A/177659: Polycomb-Associated Non-Coding RNAs.
JD049050 - Sequence 30074 from Patent EP1572962.
JD100792 - Sequence 81816 from Patent EP1572962.
JD282472 - Sequence 263496 from Patent EP1572962.
LF370157 - JP 2014500723-A/177660: Polycomb-Associated Non-Coding RNAs.
JD259976 - Sequence 241000 from Patent EP1572962.
JD325693 - Sequence 306717 from Patent EP1572962.
MA605727 - JP 2018138019-A/177653: Polycomb-Associated Non-Coding RNAs.
MA605728 - JP 2018138019-A/177654: Polycomb-Associated Non-Coding RNAs.
MA605729 - JP 2018138019-A/177655: Polycomb-Associated Non-Coding RNAs.
MA605730 - JP 2018138019-A/177656: Polycomb-Associated Non-Coding RNAs.
MA605731 - JP 2018138019-A/177657: Polycomb-Associated Non-Coding RNAs.
MA605732 - JP 2018138019-A/177658: Polycomb-Associated Non-Coding RNAs.
MA605733 - JP 2018138019-A/177659: Polycomb-Associated Non-Coding RNAs.
MA605734 - JP 2018138019-A/177660: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q92743 (Reactome details) participates in the following event(s):

R-HSA-8855825 HTRA1 hydrolyzes ACAN (Aggrecan)
R-HSA-1474228 Degradation of the extracellular matrix
R-HSA-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: D3DRE4, ENST00000368984.1, ENST00000368984.2, ENST00000368984.3, ENST00000368984.4, ENST00000368984.5, ENST00000368984.6, ENST00000368984.7, HTRA, HTRA1_HUMAN, NM_002775, PRSS11, Q92743, Q9UNS5, uc318hfw.1, uc318hfw.2
UCSC ID: ENST00000368984.8_4
RefSeq Accession: NM_002775.5
Protein: Q92743 (aka HTRA1_HUMAN or HRA1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene HTRA1:
carasil (HTRA1 Disorder)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.