Human Gene HYI (ENST00000372430.9_10) from GENCODE V47lift37
  Description: hydroxypyruvate isomerase (putative), transcript variant 3 (from RefSeq NM_001190880.3)
Gencode Transcript: ENST00000372430.9_10
Gencode Gene: ENSG00000178922.18_16
Transcript (Including UTRs)
   Position: hg19 chr1:43,916,660-43,919,602 Size: 2,943 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr1:43,916,909-43,919,464 Size: 2,556 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:43,916,660-43,919,602)mRNA (may differ from genome)Protein (277 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HYI_HUMAN
DESCRIPTION: RecName: Full=Putative hydroxypyruvate isomerase; EC=5.3.1.22; AltName: Full=Endothelial cell apoptosis protein E-CE1;
FUNCTION: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) (By similarity).
CATALYTIC ACTIVITY: Hydroxypyruvate = 2-hydroxy-3-oxopropanoate.
INDUCTION: Up-regulated by exposure to 7,8-Dihydroxy-9,10-epoxy- 7,8,9,10-tetrahydrobenzo[a]pyrene (BPDE) after which is found in the culture medium of amniotic epithelial cells.
SIMILARITY: Belongs to the hyi family.
SEQUENCE CAUTION: Sequence=AAH06140.1; Type=Frameshift; Positions=271; Sequence=AAH19041.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAV84474.1; Type=Frameshift; Positions=215, 228, 232, 238;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.67 RPKM in Ovary
Total median expression: 519.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.10138-0.276 Picture PostScript Text
3' UTR -78.40249-0.315 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026040 - HyI-like
IPR013022 - Xyl_isomerase-like_TIM-brl
IPR012307 - Xyl_isomerase_TIM-brl

Pfam Domains:
PF01261 - Xylose isomerase-like TIM barrel

SCOP Domains:
51658 - Xylose isomerase-like
51366 - Ribulose-phoshate binding barrel
51556 - Metallo-dependent hydrolases
52242 - Cobalamin (vitamin B12)-binding domain
88713 - Glycoside hydrolase/deacetylase

ModBase Predicted Comparative 3D Structure on Q5T013
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0005515 protein binding
GO:0008903 hydroxypyruvate isomerase activity
GO:0016853 isomerase activity

Biological Process:
GO:0008150 biological_process

Cellular Component:
GO:0005575 cellular_component


-  Descriptions from all associated GenBank mRNAs
  BC006140 - Homo sapiens hydroxypyruvate isomerase homolog (E. coli), mRNA (cDNA clone MGC:13085 IMAGE:3928690), complete cds.
BC019041 - Homo sapiens hydroxypyruvate isomerase homolog (E. coli), mRNA (cDNA clone MGC:20767 IMAGE:4586546), complete cds.
AY037165 - Homo sapiens hypothetical protein SB156 mRNA, complete cds.
AY775560 - Homo sapiens endothelial cell apoptosis protein E-CE1 mRNA, complete cds.
AF284750 - Homo sapiens HT036-ISO (HT036-ISO) mRNA, complete cds.
AF284751 - Homo sapiens HT036 (HT036) mRNA, complete cds.
AK096244 - Homo sapiens cDNA FLJ38925 fis, clone NT2NE2012243, highly similar to Homo sapiens hydroxypyruvate isomerase homolog (E. coli) (HYI), mRNA.
JD264020 - Sequence 245044 from Patent EP1572962.
JF911821 - Homo sapiens hydroxypyruvate isomerase mRNA, complete cds.
HQ447696 - Synthetic construct Homo sapiens clone IMAGE:100071024; CCSB013449_01 hydroxypyruvate isomerase homolog (E. coli) (HYI) gene, encodes complete protein.
KJ903338 - Synthetic construct Homo sapiens clone ccsbBroadEn_12732 HYI gene, encodes complete protein.
CU675267 - Synthetic construct Homo sapiens gateway clone IMAGE:100022419 5' read HYI mRNA.
KJ903337 - Synthetic construct Homo sapiens clone ccsbBroadEn_12731 HYI gene, encodes complete protein.
JD437861 - Sequence 418885 from Patent EP1572962.
JD458351 - Sequence 439375 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DPX4, D3DPX5, ENST00000372430.1, ENST00000372430.2, ENST00000372430.3, ENST00000372430.4, ENST00000372430.5, ENST00000372430.6, ENST00000372430.7, ENST00000372430.8, HT036, HYI_HUMAN, NM_001190880, Q5Q9A2, Q5T013, Q7Z778, Q96S83, Q9BZR3, Q9BZR4, SB156, uc318jxg.1, uc318jxg.2
UCSC ID: ENST00000372430.9_10
RefSeq Accession: NM_001190880.3
Protein: Q5T013 (aka HYI_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.