Human Gene ICOSLG (ENST00000407780.8_10) from GENCODE V47lift37
  Description: inducible T cell costimulator ligand, transcript variant 1 (from RefSeq NM_015259.6)
Gencode Transcript: ENST00000407780.8_10
Gencode Gene: ENSG00000160223.18_18
Transcript (Including UTRs)
   Position: hg19 chr21:45,642,874-45,660,826 Size: 17,953 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr21:45,648,917-45,660,700 Size: 11,784 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:45,642,874-45,660,826)mRNA (may differ from genome)Protein (302 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ICOSL_HUMAN
DESCRIPTION: RecName: Full=ICOS ligand; AltName: Full=B7 homolog 2; Short=B7-H2; AltName: Full=B7-like protein Gl50; AltName: Full=B7-related protein 1; Short=B7RP-1; AltName: CD_antigen=CD275; Flags: Precursor;
FUNCTION: Ligand for the T-cell-specific cell surface receptor ICOS. Acts as a costimulatory signal for T-cell proliferation and cytokine secretion; induces also B-cell proliferation and differentiation into plasma cells. Could play an important role in mediating local tissue responses to inflammatory conditions, as well as in modulating the secondary immune response by co- stimulating memory T-cell function (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (By similarity).
TISSUE SPECIFICITY: Isoform 1 is widely expressed (brain, heart, kidney, liver, lung, pancreas, placenta, skeletal muscle, bone marrow, colon, ovary, prostate, testis, lymph nodes, leukocytes, spleen, thymus and tonsil), while isoform 2 is detected only in lymph nodes, leukocytes and spleen. Expressed on activated monocytes and dendritic cells.
INDUCTION: Constitutive expression is further enhanced by treatment with TNF in peripheral blood B-cells and monocytes, while it is decreased in dendritic cells.
SIMILARITY: Belongs to the immunoglobulin superfamily. BTN/MOG family.
SIMILARITY: Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
SIMILARITY: Contains 1 Ig-like V-type (immunoglobulin-like) domain.
SEQUENCE CAUTION: Sequence=BAA31628.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAA31628.1; Type=Miscellaneous discrepancy; Note=The sequence differs from that shown in position 300 onward for unknown reason;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ICOSLG
Diseases sorted by gene-association score: inclusion body myositis (6), immunodeficiency with hyper-igm, type 2 (6), diffuse cutaneous systemic sclerosis (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.35 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 119.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -37.80126-0.300 Picture PostScript Text
3' UTR -2726.306043-0.451 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013162 - CD80_C2-set
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR013106 - Ig_V-set

Pfam Domains:
PF07686 - Immunoglobulin V-set domain

SCOP Domains:
48726 - Immunoglobulin

ModBase Predicted Comparative 3D Structure on O75144
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0042802 identical protein binding

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0006952 defense response
GO:0006972 hyperosmotic response
GO:0007165 signal transduction
GO:0031295 T cell costimulation
GO:0042104 positive regulation of activated T cell proliferation
GO:0042110 T cell activation
GO:0042113 B cell activation

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0036464 cytoplasmic ribonucleoprotein granule
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  HQ448129 - Synthetic construct Homo sapiens clone IMAGE:100071512; CCSB012280_01 inducible T-cell co-stimulator ligand (ICOSLG) gene, encodes complete protein.
KJ893356 - Synthetic construct Homo sapiens clone ccsbBroadEn_02750 ICOSLG gene, encodes complete protein.
AF199028 - Homo sapiens B7-like protein (GL50) mRNA, complete cds.
JD243307 - Sequence 224331 from Patent EP1572962.
JD304915 - Sequence 285939 from Patent EP1572962.
JD238484 - Sequence 219508 from Patent EP1572962.
JD238483 - Sequence 219507 from Patent EP1572962.
JD135929 - Sequence 116953 from Patent EP1572962.
JD217467 - Sequence 198491 from Patent EP1572962.
JD408515 - Sequence 389539 from Patent EP1572962.
JD388195 - Sequence 369219 from Patent EP1572962.
JD321050 - Sequence 302074 from Patent EP1572962.
JD041294 - Sequence 22318 from Patent EP1572962.
JD169272 - Sequence 150296 from Patent EP1572962.
JD346583 - Sequence 327607 from Patent EP1572962.
JD312100 - Sequence 293124 from Patent EP1572962.
AB014553 - Homo sapiens mRNA for KIAA0653 protein, partial cds.
AL355690 - Homo sapiens EST from clone 34465, full insert.
BC064637 - Homo sapiens inducible T-cell co-stimulator ligand, mRNA (cDNA clone MGC:70380 IMAGE:5758883), complete cds.
AK090492 - Homo sapiens cDNA FLJ33173 fis, clone ADRGL2002191, highly similar to ICOS ligand precursor.
AX746477 - Sequence 2 from Patent EP1308459.
AF289028 - Homo sapiens transmembrane protein B7-H2 ICOS ligand mRNA, complete cds.
JD129800 - Sequence 110824 from Patent EP1572962.
JD520469 - Sequence 501493 from Patent EP1572962.
AK290192 - Homo sapiens cDNA FLJ77643 complete cds, highly similar to Homo sapiens B7-like protein (B7H2), mRNA.
JD408273 - Sequence 389297 from Patent EP1572962.
AK316176 - Homo sapiens cDNA, FLJ79075 complete cds, highly similar to ICOS ligand precursor.
AK316143 - Homo sapiens cDNA, FLJ79042 complete cds, highly similar to ICOS ligand precursor.
JD378543 - Sequence 359567 from Patent EP1572962.
JD430875 - Sequence 411899 from Patent EP1572962.
AK294031 - Homo sapiens cDNA FLJ50464 complete cds, highly similar to ICOS ligand precursor.
AF216749 - Homo sapiens B7-related protein-1 mRNA, complete cds.
AB528572 - Synthetic construct DNA, clone: pF1KE1014, Homo sapiens ICOSLG gene for inducible T-cell co-stimulator ligand, without stop codon, in Flexi system.
AK314369 - Homo sapiens cDNA, FLJ95137, Homo sapiens B7-like protein (B7H2), mRNA.
CU687930 - Synthetic construct Homo sapiens gateway clone IMAGE:100021702 5' read ICOSLG mRNA.
AK311496 - Homo sapiens cDNA, FLJ18538.
JD391717 - Sequence 372741 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_ctla4Pathway - The Co-Stimulatory Signal During T-cell Activation

Reactome (by CSHL, EBI, and GO)

Protein O75144 (Reactome details) participates in the following event(s):

R-HSA-388817 ICOS binds ICOSL/B7-H2
R-HSA-388841 Costimulation by the CD28 family
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8MUZ1, B7H2, B7RP1, ENST00000407780.1, ENST00000407780.2, ENST00000407780.3, ENST00000407780.4, ENST00000407780.5, ENST00000407780.6, ENST00000407780.7, ICOSL, ICOSL_HUMAN, KIAA0653, NM_015259, O75144, Q9HD18, Q9NRQ1, uc319eaa.1, uc319eaa.2
UCSC ID: ENST00000407780.8_10
RefSeq Accession: NM_015259.6
Protein: O75144 (aka ICOSL_HUMAN or ICOL_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.