Human Gene ID3 (ENST00000374561.6_7) from GENCODE V47lift37
  Description: inhibitor of DNA binding 3, HLH protein (from RefSeq NM_002167.5)
Gencode Transcript: ENST00000374561.6_7
Gencode Gene: ENSG00000117318.9_9
Transcript (Including UTRs)
   Position: hg19 chr1:23,884,417-23,885,992 Size: 1,576 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr1:23,885,451-23,885,917 Size: 467 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:23,884,417-23,885,992)mRNA (may differ from genome)Protein (119 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ID3_HUMAN
DESCRIPTION: RecName: Full=DNA-binding protein inhibitor ID-3; AltName: Full=Class B basic helix-loop-helix protein 25; Short=bHLHb25; AltName: Full=Helix-loop-helix protein HEIR-1; AltName: Full=ID-like protein inhibitor HLH 1R21; AltName: Full=Inhibitor of DNA binding 3;
FUNCTION: ID (inhibitor of DNA binding) HLH proteins lack a basic DNA-binding domain but are able to form heterodimers with other HLH proteins, thereby inhibiting DNA binding. ID-3 inhibits the binding of E2A-containing protein complexes to muscle creatine kinase E-box enhancer. May inhibit other transcription factors.
SUBUNIT: Interacts with COPS5 and COPS7A (By similarity). Homodimer, and heterodimer with other HLH proteins.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Expressed abundantly in lung, kidney and adrenal gland, but not in adult brain.
INDUCTION: By phorbol 12-myristate 13-acetate (PMA).
SIMILARITY: Contains 1 bHLH (basic helix-loop-helix) domain.
SEQUENCE CAUTION: Sequence=CAA47360.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ID3
Diseases sorted by gene-association score: fibrodysplasia ossificans progressiva (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 154.64 RPKM in Artery - Aorta
Total median expression: 2390.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.1075-0.268 Picture PostScript Text
3' UTR -186.60515-0.362 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026052 - DNA-bd_prot-inh
IPR011598 - HLH_dom

Pfam Domains:
PF00010 - Helix-loop-helix DNA-binding domain

SCOP Domains:
47459 - HLH, helix-loop-helix DNA-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2LFH - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q02535
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0019904 protein domain specific binding
GO:0046983 protein dimerization activity
GO:1901707 leptomycin B binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001656 metanephros development
GO:0006275 regulation of DNA replication
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007275 multicellular organism development
GO:0007417 central nervous system development
GO:0007507 heart development
GO:0007517 muscle organ development
GO:0007623 circadian rhythm
GO:0009611 response to wounding
GO:0010629 negative regulation of gene expression
GO:0030182 neuron differentiation
GO:0030855 epithelial cell differentiation
GO:0030903 notochord development
GO:0042476 odontogenesis
GO:0043065 positive regulation of apoptotic process
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045662 negative regulation of myoblast differentiation
GO:0045668 negative regulation of osteoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0048511 rhythmic process
GO:0051726 regulation of cell cycle
GO:0072750 cellular response to leptomycin B

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK225965 - Homo sapiens mRNA for inhibitor of DNA binding 3 variant, clone: FCC114B01.
JB837395 - Sequence 6 from Patent WO2013106494.
BC003107 - Homo sapiens inhibitor of DNA binding 3, dominant negative helix-loop-helix protein, mRNA (cDNA clone MGC:1988 IMAGE:3543936), complete cds.
A17546 - H.sapiens mRNA HEIR-1 (neuroblastoma-associated regulator).
X66924 - H.sapiens heir-1 mRNA for helix-loop-helix protein.
X69111 - H.sapiens HLH 1R21 mRNA for helix-loop-helix protein.
JD297042 - Sequence 278066 from Patent EP1572962.
AK290003 - Homo sapiens cDNA FLJ76527 complete cds, highly similar to Homo sapiens inhibitor of DNA binding 3, dominant negative helix-loop-helix protein (ID3), mRNA.
JD214397 - Sequence 195421 from Patent EP1572962.
JD470537 - Sequence 451561 from Patent EP1572962.
A17548 - H.sapiens mRNA for protein HEIR.1 (neuroblastoma-associated regulator).
KJ897028 - Synthetic construct Homo sapiens clone ccsbBroadEn_06422 ID3 gene, encodes complete protein.
BT006791 - Homo sapiens inhibitor of DNA binding 3, dominant negative helix-loop-helix protein mRNA, complete cds.
DQ892504 - Synthetic construct clone IMAGE:100005134; FLH186945.01X; RZPDo839C0272D inhibitor of DNA binding 3, dominant negative helix-loop-helix protein (ID3) gene, encodes complete protein.
DQ895539 - Synthetic construct Homo sapiens clone IMAGE:100009999; FLH263694.01L; RZPDo839B01147D inhibitor of DNA binding 3, dominant negative helix-loop-helix protein (ID3) gene, encodes complete protein.
DQ895717 - Synthetic construct Homo sapiens clone IMAGE:100010177; FLH186941.01L; RZPDo839C0262D inhibitor of DNA binding 3, dominant negative helix-loop-helix protein (ID3) gene, encodes complete protein.
AB528505 - Synthetic construct DNA, clone: pF1KB8193, Homo sapiens ID3 gene for inhibitor of DNA binding 3, dominant negative helix-loop-helix protein, without stop codon, in Flexi system.
D28449 - Homo sapiens mRNA for helix-loop-helix protein 1R21, 5'UTR region.

-  Other Names for This Gene
  Alternate Gene Symbols: 1R21, A8K1T8, BHLHB25, ENST00000374561.1, ENST00000374561.2, ENST00000374561.3, ENST00000374561.4, ENST00000374561.5, HEIR1, ID3_HUMAN, NM_002167, O75641, Q02535, uc318lrf.1, uc318lrf.2
UCSC ID: ENST00000374561.6_7
RefSeq Accession: NM_002167.5
Protein: Q02535 (aka ID3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.