Human Gene IFNGR1 (ENST00000367739.9_11) from GENCODE V47lift37
  Description: interferon gamma receptor 1, transcript variant 1 (from RefSeq NM_000416.3)
Gencode Transcript: ENST00000367739.9_11
Gencode Gene: ENSG00000027697.16_17
Transcript (Including UTRs)
   Position: hg19 chr6:137,518,622-137,540,522 Size: 21,901 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr6:137,519,168-137,540,464 Size: 21,297 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:137,518,622-137,540,522)mRNA (may differ from genome)Protein (489 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: INGR1_HUMAN
DESCRIPTION: RecName: Full=Interferon gamma receptor 1; Short=IFN-gamma receptor 1; Short=IFN-gamma-R1; AltName: Full=CDw119; AltName: CD_antigen=CD119; Flags: Precursor;
FUNCTION: Receptor for interferon gamma. Two receptors bind one interferon gamma dimer.
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
PTM: Phosphorylated at Ser/Thr residues.
POLYMORPHISM: A genetic variation in the IFNGR1 gene is associated with susceptibility to Helicobacter pylori infection [MIM:600263].
DISEASE: Defects in IFNGR1 are a cause of mendelian susceptibility to mycobacterial disease (MSMD) [MIM:209950]; also known as familial disseminated atypical mycobacterial infection. This rare condition confers predisposition to illness caused by moderately virulent mycobacterial species, such as Bacillus Calmette-Guerin (BCG) vaccine and environmental non-tuberculous mycobacteria, and by the more virulent Mycobacterium tuberculosis. Other microorganisms rarely cause severe clinical disease in individuals with susceptibility to mycobacterial infections, with the exception of Salmonella which infects less than 50% of these individuals. The pathogenic mechanism underlying MSMD is the impairment of interferon-gamma mediated immunity whose severity determines the clinical outcome. Some patients die of overwhelming mycobacterial disease with lepromatous-like lesions in early childhood, whereas others develop, later in life, disseminated but curable infections with tuberculoid granulomas. MSMD is a genetically heterogeneous disease with autosomal recessive, autosomal dominant or X-linked inheritance.
SIMILARITY: Belongs to the type II cytokine receptor family.
SIMILARITY: Contains 2 fibronectin type-III domains.
SIMILARITY: Contains 2 Ig-like C2-type (immunoglobulin-like) domains.
WEB RESOURCE: Name=IFNGR1base; Note=IFNGR1 mutation db; URL="http://bioinf.uta.fi/IFNGR1base/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/IFNGR1";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/ifngr1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IFNGR1
Diseases sorted by gene-association score: immunodeficiency 27a, mycobacteriosis, ar* (1575), immunodeficiency 27b, mycobacteriosis, ad* (1250), h. pylori infection* (575), atypical mycobacteriosis, familial* (425), familial atypical mycobacteriosis, ifngr1-related* (100), interferon gamma, receptor 1, deficiency (30), tuberculosis (25), paratyphoid fever (22), salmonellosis (22), coccidioidomycosis (22), osteomyelitis (17), typhoid fever (17), leishmaniasis (15), eczema herpeticum (14), pulmonary tuberculosis (9), schistosomiasis (9), lymphadenitis (8), primary immunodeficiency disease (7), lepromatous leprosy (7), penicillin allergy (7), mycobacterium avium complex disease (6), visceral leishmaniasis (5), omenn syndrome (4), malaria (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D000082 Acetaminophen
  • D008070 Lipopolysaccharides
  • D013749 Tetrachlorodibenzodioxin
  • C007262 deoxynivalenol
  • C049325 1,2-dithiol-3-thione
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D000171 Acrolein
  • D016604 Aflatoxin B1
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 107.46 RPKM in Whole Blood
Total median expression: 1802.42 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -21.8058-0.376 Picture PostScript Text
3' UTR -110.10546-0.202 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR013783 - Ig-like_fold
IPR021126 - Interferon_gamma_pox/mammal
IPR008355 - Interferon_gamma_rcpt_asu

Pfam Domains:
PF01108 - Tissue factor
PF07140 - Interferon gamma receptor (IFNGR1)
PF09294 - Interferon-alpha/beta receptor, fibronectin type III

SCOP Domains:
49265 - Fibronectin type III

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1FG9 - X-ray MuPIT 1FYH - X-ray MuPIT 1JRH - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P15260
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004906 interferon-gamma receptor activity
GO:0005515 protein binding
GO:0019955 cytokine binding

Biological Process:
GO:0007165 signal transduction
GO:0009615 response to virus
GO:0060333 interferon-gamma-mediated signaling pathway
GO:0060334 regulation of interferon-gamma-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF384622 - JP 2014500723-A/192125: Polycomb-Associated Non-Coding RNAs.
LP895565 - Sequence 429 from Patent EP3253886.
EF535103 - Homo sapiens truncated interferon-gamma receptor 1 (IFNGR1) mRNA, complete cds.
J03143 - Human interferon-gamma receptor mRNA, complete cds.
AK127636 - Homo sapiens cDNA FLJ45734 fis, clone JCMLC1000159, moderately similar to Interferon-gamma receptor alpha chain precursor.
BC005333 - Homo sapiens interferon gamma receptor 1, mRNA (cDNA clone MGC:12420 IMAGE:3950528), complete cds.
JD146356 - Sequence 127380 from Patent EP1572962.
AK222803 - Homo sapiens mRNA for interferon gamma receptor 1 variant, clone: HEP02874.
AK297052 - Homo sapiens cDNA FLJ54961 complete cds, highly similar to Interferon-gamma receptor alpha chain precursor.
AF056979 - Homo sapiens clone YAN1 interferon-gamma receptor mRNA, complete cds.
JD292353 - Sequence 273377 from Patent EP1572962.
JD297284 - Sequence 278308 from Patent EP1572962.
AK312674 - Homo sapiens cDNA, FLJ93067, highly similar to Homo sapiens interferon gamma receptor 1 (IFNGR1), mRNA.
KJ891440 - Synthetic construct Homo sapiens clone ccsbBroadEn_00834 IFNGR1 gene, encodes complete protein.
KR710171 - Synthetic construct Homo sapiens clone CCSBHm_00010196 IFNGR1 (IFNGR1) mRNA, encodes complete protein.
KR710172 - Synthetic construct Homo sapiens clone CCSBHm_00010199 IFNGR1 (IFNGR1) mRNA, encodes complete protein.
KR710173 - Synthetic construct Homo sapiens clone CCSBHm_00010200 IFNGR1 (IFNGR1) mRNA, encodes complete protein.
KR710174 - Synthetic construct Homo sapiens clone CCSBHm_00010203 IFNGR1 (IFNGR1) mRNA, encodes complete protein.
BT006814 - Homo sapiens interferon gamma receptor 1 mRNA, complete cds.
KU178144 - Homo sapiens interferon gamma receptor 1 isoform 1 (IFNGR1) mRNA, partial cds.
KU178145 - Homo sapiens interferon gamma receptor 1 isoform 2 (IFNGR1) mRNA, complete cds, alternatively spliced.
AB527981 - Synthetic construct DNA, clone: pF1KB5856, Homo sapiens IFNGR1 gene for interferon gamma receptor 1, without stop codon, in Flexi system.
CU675119 - Synthetic construct Homo sapiens gateway clone IMAGE:100018342 5' read IFNGR1 mRNA.
LF321933 - JP 2014500723-A/129436: Polycomb-Associated Non-Coding RNAs.
LF321932 - JP 2014500723-A/129435: Polycomb-Associated Non-Coding RNAs.
LF321931 - JP 2014500723-A/129434: Polycomb-Associated Non-Coding RNAs.
AK294252 - Homo sapiens cDNA FLJ53602 complete cds, highly similar to Interferon-gamma receptor alpha chain precursor.
EF173879 - Homo sapiens interferon gamma receptor 1 mRNA, partial cds.
LF321930 - JP 2014500723-A/129433: Polycomb-Associated Non-Coding RNAs.
LF321929 - JP 2014500723-A/129432: Polycomb-Associated Non-Coding RNAs.
JD219082 - Sequence 200106 from Patent EP1572962.
MA620199 - JP 2018138019-A/192125: Polycomb-Associated Non-Coding RNAs.
MA557510 - JP 2018138019-A/129436: Polycomb-Associated Non-Coding RNAs.
MA557509 - JP 2018138019-A/129435: Polycomb-Associated Non-Coding RNAs.
MA557508 - JP 2018138019-A/129434: Polycomb-Associated Non-Coding RNAs.
MA557507 - JP 2018138019-A/129433: Polycomb-Associated Non-Coding RNAs.
MA557506 - JP 2018138019-A/129432: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nktPathway - Selective expression of chemokine receptors during T-cell polarization
h_tidPathway - Chaperones modulate interferon Signaling Pathway
h_ifngPathway - IFN gamma signaling pathway
h_th1th2Pathway - Th1/Th2 Differentiation

Reactome (by CSHL, EBI, and GO)

Protein P15260 (Reactome details) participates in the following event(s):

R-HSA-873926 Interaction of IFNG with IFNGR
R-HSA-873919 Phosphorylation of JAK2
R-HSA-877308 Dephosphorylation of JAKs by PTPs
R-HSA-873918 Transphosphorylation of JAK1
R-HSA-877269 SOCS-1 and SOCS-3 binds to p-JAK2
R-HSA-873924 Phosphorylation of IFNGR1 by JAK kinases
R-HSA-873921 Binding of STAT1 to p-IFNGR1
R-HSA-873927 Release of STAT1 dimer from active receptor unit
R-HSA-909552 Phosphorylation of STAT1 at Ser727
R-HSA-873922 Phosphorylation of STAT1 by JAK kinases
R-HSA-877300 Interferon gamma signaling
R-HSA-877312 Regulation of IFNG signaling
R-HSA-913531 Interferon Signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B4DFT7, E1P587, ENST00000367739.1, ENST00000367739.2, ENST00000367739.3, ENST00000367739.4, ENST00000367739.5, ENST00000367739.6, ENST00000367739.7, ENST00000367739.8, IFNGR1 , INGR1_HUMAN, NM_000416, P15260, Q53Y96, uc318gdv.1, uc318gdv.2
UCSC ID: ENST00000367739.9_11
RefSeq Accession: NM_000416.3
Protein: P15260 (aka INGR1_HUMAN or INGR_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.