Human Gene IGLC6 (ENST00000410078.2_2) from GENCODE V47lift37
  Description: immunoglobulin lambda constant 6 (gene/pseudogene) (from HGNC IGLC6)
Gencode Transcript: ENST00000410078.2_2
Gencode Gene: ENSG00000222037.5_5
Transcript (Including UTRs)
   Position: hg19 chr22:23,261,707-23,262,023 Size: 317 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:23,261,707-23,262,023)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerHGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.65 RPKM in Spleen
Total median expression: 28.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  MG879755 - Homo sapiens isolate AW2_plasmablasts_Light_human_A4 immunoglobulin light chain variable region mRNA, partial cds.
MG879780 - Homo sapiens isolate AW2_plasmablasts_Light_human_D2 immunoglobulin light chain variable region mRNA, partial cds.
MG879871 - Homo sapiens isolate AW3_plasmablasts_Light_human_F6 immunoglobulin light chain variable region mRNA, partial cds.
S77011 - {pseudogene} Ig V lambda IJ psi C lambda 6=Ig lambda chain surface Ig receptor VJC region {truncated light chain constant region} [human, B lymphoma cell line OCI LY8, mRNA Partial, 623 nt].
Y09391 - H.sapiens mRNA for variable immunoglobulin anti-steroid, light chain, gene family V-lambda-1.
S79247 - Ig VL=immunoglobulin light chain variable region [human, Glanzmann thrombasthenia patient, mRNA Partial, 327 nt].
AF103607 - Homo sapiens isolate donor D clone D68L immunoglobulin lambda light chain variable region mRNA, partial cds.
AF103670 - Homo sapiens isolate donor N clone N38L immunoglobulin lambda light chain variable region mRNA, partial cds.
AF103619 - Homo sapiens isolate donor N clone N124L immunoglobulin lambda light chain variable region mRNA, partial cds.
L19893 - Homo sapiens immunoglobulin variable region mRNA, partial cds.
AJ698335 - Homo sapiens partial mRNA for immunoglobulin lambda light chain variable region (IGLV gene), isolate B-CLL G004.
MG879763 - Homo sapiens isolate AW2_plasmablasts_Light_human_B2 immunoglobulin light chain variable region mRNA, partial cds.
KX436833 - Homo sapiens clone HPV16.53-LC immunoglobulin light chain mRNA, partial cds.
AF124170 - Homo sapiens clone RCJL1 lambda 1 immunoglobin light chain variable region mRNA, partial cds.
KX947562 - UNVERIFIED: Homo sapiens isolate TB035HBMEMl500 mRNA sequence.
MG879788 - Homo sapiens isolate AW2_plasmablasts_Light_human_E10 immunoglobulin light chain variable region mRNA, partial cds.
L26908 - Human immunoglobulin lambda chain (IGL) mRNA, VJ region, partial cds.
AJ308461 - Homo sapiens partial mRNA for immunoglobulin light chain variable region (IGLV2 gene), clone TEF2.
MK269744 - Homo sapiens clone R1142F-27Nov07-3LA8-4 immunoglobulin lambda light chain variable region mRNA, partial cds.
MK797028 - Homo sapiens isolate P0833 IgL_IGLV1-44 mRNA, partial cds.
MK902437 - Homo sapiens isolate 5.1.12B05-VL immunoglobulin light chain variable region mRNA, partial cds.
MK902520 - Homo sapiens isolate 9.6.3E02-VL immunoglobulin light chain variable region mRNA, partial cds.
MK902506 - Homo sapiens isolate 5.1.8C02-VL immunoglobulin light chain variable region mRNA, partial cds.
MK902500 - Homo sapiens isolate 5.1.7C03-VL immunoglobulin light chain variable region mRNA, partial cds.
MK902459 - Homo sapiens isolate 5.1.2C10-VL immunoglobulin light chain variable region mRNA, partial cds.
MK902465 - Homo sapiens isolate 5.1.2F03-VL immunoglobulin light chain variable region mRNA, partial cds.
MK902441 - Homo sapiens isolate 5.1.12F01-VL immunoglobulin light chain variable region mRNA, partial cds.
AF103644 - Homo sapiens isolate donor N clone N190L immunoglobulin lambda light chain variable region mRNA, partial cds.
AF103645 - Homo sapiens isolate donor N clone N192L immunoglobulin lambda light chain variable region mRNA, partial cds.
MK902456 - Homo sapiens isolate 5.1.2B06-VL immunoglobulin light chain variable region mRNA, partial cds.
AB776852 - Homo sapiens mRNA for IgG L chain, complete cds, clone: 235E6B1L.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000410078.1, uc319gof.1
UCSC ID: ENST00000410078.2_2
RefSeq Accession: NM_000014.6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.