Human Gene IHH (ENST00000295731.7_7) from GENCODE V47lift37
  Description: Indian hedgehog signaling molecule (from RefSeq NM_002181.4)
Gencode Transcript: ENST00000295731.7_7
Gencode Gene: ENSG00000163501.7_9
Transcript (Including UTRs)
   Position: hg19 chr2:219,919,146-219,925,643 Size: 6,498 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr2:219,919,929-219,925,189 Size: 5,261 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:219,919,146-219,925,643)mRNA (may differ from genome)Protein (411 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IHH_HUMAN
DESCRIPTION: RecName: Full=Indian hedgehog protein; Short=IHH; AltName: Full=HHG-2; Contains: RecName: Full=Indian hedgehog protein N-product; Contains: RecName: Full=Indian hedgehog protein C-product; Flags: Precursor;
FUNCTION: Intercellular signal essential for a variety of patterning events during development. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. Implicated in endochondral ossification: may regulate the balance between growth and ossification of the developing bones. Induces the expression of parathyroid hormone-related protein (PTHRP) (By similarity).
SUBCELLULAR LOCATION: Indian hedgehog protein N-product: Cell membrane; Lipid-anchor; Extracellular side (By similarity). Note=The N-terminal peptide remains associated with the cell surface (By similarity).
SUBCELLULAR LOCATION: Indian hedgehog protein C-product: Secreted, extracellular space (By similarity). Note=The C-terminal peptide diffuses from the cell (By similarity).
TISSUE SPECIFICITY: Expressed in embryonic lung, and in adult kidney and liver.
PTM: The C-terminal domain displays an autoproteolysis activity and a cholesterol transferase activity. Both activities result in the cleavage of the full-length protein and covalent attachment of a cholesterol moiety to the C-terminal of the newly generated N- terminal fragment (N-product). The N-product is the active species in both local and long-range signaling, whereas the C-product has no signaling activity (By similarity).
PTM: Cholesterylation is required for N-product targeting to lipid rafts and multimerization (By similarity).
PTM: Palmitoylated. N-palmitoylation is required for N-product multimerization and full activity.
DISEASE: Defects in IHH are the cause of brachydactyly type A1 (BDA1) [MIM:112500]. BDA1 is an autosomal dominant disorder characterized by middle phalanges of all the digits rudimentary or fused with the terminal phalanges. The proximal phalanges of the thumbs and big toes are short.
DISEASE: Defects in IHH are a cause of acrocapitofemoral dysplasia (ACFD) [MIM:607778]. ACFD is a disorder characterized by short stature of variable severity with postnatal onset. The most constant radiographic abnormalities are observed in the tubular bones of the hands and in the proximal part of the femur. Cone- shaped epiphyses or a similar epiphyseal configuration with premature epimetaphyseal fusion result in shortening of the skeletal components involved. Cone-shaped epiphyses were also present to a variable extent at the shoulders, knees, and ankles.
SIMILARITY: Belongs to the hedgehog family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/IHH";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IHH
Diseases sorted by gene-association score: brachydactyly, type a1* (1702), acrocapitofemoral dysplasia* (1607), brachydactyly (28), craniosynostosis philadelphia type (18), small intestine leiomyosarcoma (15), small intestinal sarcoma (15), acrocallosal syndrome (12), chondrodysplasia, blomstrand type (9), pancreas, annular (8), intracranial hypertension, idiopathic (8), metaphyseal chondrodysplasia, murk jansen type (8), osteogenesis imperfecta, type v (6), hypotrichosis 1 (6), multiple enchondromatosis, maffucci type (6), osteochondrosis (5), enchondromatosis, multiple, ollier type (5), muenke syndrome (5), multiple synostoses syndrome (5), sed congenita (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.72 RPKM in Colon - Transverse
Total median expression: 50.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -221.50454-0.488 Picture PostScript Text
3' UTR -311.60783-0.398 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001657 - Hedgehog
IPR009045 - Hedgehog_sig/DD-Pept_Zn-bd_dom
IPR000320 - Hedgehog_signaling_dom
IPR001767 - Hint_dom
IPR003586 - Hint_dom_C
IPR003587 - Hint_dom_N
IPR006141 - Intein_splice_site

Pfam Domains:
PF01079 - Hint module
PF01085 - Hedgehog amino-terminal signalling domain

SCOP Domains:
51294 - Hedgehog/intein (Hint) domain
55166 - Hedgehog/DD-peptidase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3K7G - X-ray MuPIT 3K7H - X-ray MuPIT 3K7I - X-ray MuPIT 3K7J - X-ray MuPIT 3N1F - X-ray MuPIT 3N1M - X-ray MuPIT 3N1O - X-ray MuPIT 3N1P - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14623
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005113 patched binding
GO:0005509 calcium ion binding
GO:0008233 peptidase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0001501 skeletal system development
GO:0001503 ossification
GO:0001569 branching involved in blood vessel morphogenesis
GO:0001649 osteoblast differentiation
GO:0001701 in utero embryonic development
GO:0001708 cell fate specification
GO:0001763 morphogenesis of a branching structure
GO:0001944 vasculature development
GO:0001947 heart looping
GO:0002053 positive regulation of mesenchymal cell proliferation
GO:0003382 epithelial cell morphogenesis
GO:0003406 retinal pigment epithelium development
GO:0003413 chondrocyte differentiation involved in endochondral bone morphogenesis
GO:0006029 proteoglycan metabolic process
GO:0006508 proteolysis
GO:0007224 smoothened signaling pathway
GO:0007267 cell-cell signaling
GO:0007275 multicellular organism development
GO:0007389 pattern specification process
GO:0008284 positive regulation of cell proliferation
GO:0009612 response to mechanical stimulus
GO:0009880 embryonic pattern specification
GO:0016539 intein-mediated protein splicing
GO:0030154 cell differentiation
GO:0030704 vitelline membrane formation
GO:0031016 pancreas development
GO:0032355 response to estradiol
GO:0032967 positive regulation of collagen biosynthetic process
GO:0033085 negative regulation of T cell differentiation in thymus
GO:0033088 negative regulation of immature T cell proliferation in thymus
GO:0033089 positive regulation of T cell differentiation in thymus
GO:0035264 multicellular organism growth
GO:0035988 chondrocyte proliferation
GO:0040008 regulation of growth
GO:0042733 embryonic digit morphogenesis
GO:0043010 camera-type eye development
GO:0043066 negative regulation of apoptotic process
GO:0045453 bone resorption
GO:0045596 negative regulation of cell differentiation
GO:0045880 positive regulation of smoothened signaling pathway
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046638 positive regulation of alpha-beta T cell differentiation
GO:0046639 negative regulation of alpha-beta T cell differentiation
GO:0048074 negative regulation of eye pigmentation
GO:0048469 cell maturation
GO:0048557 embryonic digestive tract morphogenesis
GO:0048596 embryonic camera-type eye morphogenesis
GO:0048666 neuron development
GO:0048745 smooth muscle tissue development
GO:0050679 positive regulation of epithelial cell proliferation
GO:0051216 cartilage development
GO:0060135 maternal process involved in female pregnancy
GO:0060220 camera-type eye photoreceptor cell fate commitment
GO:0060323 head morphogenesis
GO:0061053 somite development
GO:0072498 embryonic skeletal joint development
GO:0090136 epithelial cell-cell adhesion
GO:0097421 liver regeneration

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC034757 - Homo sapiens Indian hedgehog homolog (Drosophila), mRNA (cDNA clone IMAGE:5182642), partial cds.
JD278979 - Sequence 260003 from Patent EP1572962.
JD062062 - Sequence 43086 from Patent EP1572962.
JD139459 - Sequence 120483 from Patent EP1572962.
JD537980 - Sequence 519004 from Patent EP1572962.
JD278866 - Sequence 259890 from Patent EP1572962.
L38517 - Homo sapiens indian hedgehog protein (IHH) mRNA, 5' end.
JD251890 - Sequence 232914 from Patent EP1572962.
JD550119 - Sequence 531143 from Patent EP1572962.
JD482398 - Sequence 463422 from Patent EP1572962.
JD196297 - Sequence 177321 from Patent EP1572962.
JD083446 - Sequence 64470 from Patent EP1572962.
JD368001 - Sequence 349025 from Patent EP1572962.
JD485291 - Sequence 466315 from Patent EP1572962.
JD322465 - Sequence 303489 from Patent EP1572962.
JD334763 - Sequence 315787 from Patent EP1572962.
JD544797 - Sequence 525821 from Patent EP1572962.
BC136587 - Homo sapiens Indian hedgehog homolog (Drosophila), mRNA (cDNA clone MGC:168200 IMAGE:9020577), complete cds.
BC136588 - Homo sapiens Indian hedgehog homolog (Drosophila), mRNA (cDNA clone MGC:168201 IMAGE:9020578), complete cds.
JD200287 - Sequence 181311 from Patent EP1572962.
JD044314 - Sequence 25338 from Patent EP1572962.
JD437353 - Sequence 418377 from Patent EP1572962.
JD483367 - Sequence 464391 from Patent EP1572962.
JD484473 - Sequence 465497 from Patent EP1572962.
CU689958 - Synthetic construct Homo sapiens gateway clone IMAGE:100020777 5' read IHH mRNA.
KJ901524 - Synthetic construct Homo sapiens clone ccsbBroadEn_10918 IHH gene, encodes complete protein.
KR710695 - Synthetic construct Homo sapiens clone CCSBHm_00015667 IHH (IHH) mRNA, encodes complete protein.
KR710696 - Synthetic construct Homo sapiens clone CCSBHm_00015668 IHH (IHH) mRNA, encodes complete protein.
KR710697 - Synthetic construct Homo sapiens clone CCSBHm_00015669 IHH (IHH) mRNA, encodes complete protein.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14623 (Reactome details) participates in the following event(s):

R-HSA-5362437 C-terminal Hh fragments are bound by lectins
R-HSA-5358340 Autoproteolytic cleavage of Hh precursors
R-HSA-5358343 HHAT palmitoylates Hh N-terminal fragment
R-HSA-5358336 P4HB forms mixed disulphides with Hh precursors
R-HSA-5362459 VCP-catalyzed ATP hydrolysis promotes the translocation of Hh-C into the cytosol
R-HSA-5362422 Hh-Np binds to DISP2
R-HSA-5362427 Hh-Np binds GPC5
R-HSA-5362793 Hh-Np is cleaved by ADAM17 to promote ligand shedding
R-HSA-445448 HHIP binds Hedgehog
R-HSA-5632649 Hh-Npp binds GAS1 and PTCH
R-HSA-5632652 Hh-Npp binds CDON and PTCH
R-HSA-5632653 Hh-Npp binds BOC:PTCH1
R-HSA-5362551 Hh-Np binds SCUBE2 in the extracellular region to promote long-range signalling
R-HSA-5362553 NOTUM releases Hh-Np:GPC5 from the plasma membrane
R-HSA-5362441 C-terminal Hh fragments are recruited to SEL1:SYVN1 at the ER membrane
R-HSA-5362412 SYVN1 ubiquitinates Hh C-terminal fragments
R-HSA-8941284 RUNX2 regulates chondrocyte maturation
R-HSA-5358346 Hedgehog ligand biogenesis
R-HSA-5658034 HHAT G278V abrogates palmitoylation of Hh-Np
R-HSA-5362798 Release of Hh-Np from the secreting cell
R-HSA-5632681 Ligand-receptor interactions
R-HSA-8941326 RUNX2 regulates bone development
R-HSA-5358351 Signaling by Hedgehog
R-HSA-5387390 Hh mutants abrogate ligand secretion
R-HSA-5632684 Hedgehog 'on' state
R-HSA-8878166 Transcriptional regulation by RUNX2
R-HSA-162582 Signal Transduction
R-HSA-5663202 Diseases of signal transduction
R-HSA-212436 Generic Transcription Pathway
R-HSA-1643685 Disease
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B9EGM5, ENST00000295731.1, ENST00000295731.2, ENST00000295731.3, ENST00000295731.4, ENST00000295731.5, ENST00000295731.6, IHH , IHH_HUMAN, NM_002181, O43322, Q14623, Q8N4B9, uc317lnp.1, uc317lnp.2
UCSC ID: ENST00000295731.7_7
RefSeq Accession: NM_002181.4
Protein: Q14623 (aka IHH_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.