Human Gene IL10 (ENST00000423557.1_8) from GENCODE V47lift37
  Description: interleukin 10, transcript variant 3 (from RefSeq NR_168466.1)
Gencode Transcript: ENST00000423557.1_8
Gencode Gene: ENSG00000136634.7_15
Transcript (Including UTRs)
   Position: hg19 chr1:206,940,947-206,945,839 Size: 4,893 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr1:206,941,981-206,945,780 Size: 3,800 Coding Exon Count: 5 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:206,940,947-206,945,839)mRNA (may differ from genome)Protein (178 aa)
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-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL10
Diseases sorted by gene-association score: rheumatoid arthritis* (996), graft-versus-host disease, protection against* (567), hiv-1* (266), inflammatory bowel disease 25, early onset, autosomal recessive* (175), leishmaniasis (43), visceral leishmaniasis (34), chagas disease (33), paracoccidioidomycosis (31), cutaneous leishmaniasis (27), trypanosomiasis (24), intraocular lymphoma (23), sporotrichosis (21), loiasis (21), chronic graft versus host disease (19), relapsing-remitting multiple sclerosis (19), punctate inner choroidopathy (18), post-transplant lymphoproliferative disease (18), behcet syndrome* (18), tropical endomyocardial fibrosis (18), juvenile myasthenia gravis (18), schistosomiasis (18), idiopathic achalasia (18), inflammatory bowel disease (18), neurosyphilis (18), lymphadenitis (16), multidrug-resistant tuberculosis (16), cow milk allergy (16), filarial elephantiasis (16), mycobacterium avium complex disease (15), buruli ulcer (15), lepromatous leprosy (15), colitis (14), systemic lupus erythematosus (14), mouth disease (14), pulmonary tuberculosis (14), dengue hemorrhagic fever (14), plasmodium falciparum malaria (14), q fever (13), panuveitis (13), malaria (13), hand, foot and mouth disease (13), primary immunodeficiency disease (13), cystic echinococcosis (13), orofacial granulomatosis (13), funisitis (12), acute disseminated encephalomyelitis (12), tuberculosis (12), tuberculoid leprosy (12), plasmodium vivax malaria (12), central nervous system lymphoma (12), extrapulmonary tuberculosis (11), sleeping sickness (11), eye lymphoma (11), tetanus (11), uveitis (11), spotted fever (11), intermediate uveitis (11), toxic shock syndrome (11), acute pancreatitis (11), mucocutaneous leishmaniasis (11), fascioliasis (11), genital herpes (10), trichuriasis (10), acute graft versus host disease (10), allergic hypersensitivity disease (10), discoid lupus erythematosus (10), eales disease (10), multicentric castleman disease (10), pneumonia (10), chronic mucocutaneous candidiasis (10), vulvovaginitis (10), transient hypogammaglobulinemia (10), rheumatic heart disease (10), echinococcosis (10), scabies (10), leptospirosis (10), peanut allergy (10), ross river fever (10), autoimmune lymphoproliferative syndrome (10), allergic asthma (10), filariasis (10), tropical spastic paraparesis (10), primary systemic mycosis (9), paranasal sinus disease (9), adult respiratory distress syndrome (9), primary progressive multiple sclerosis (9), lipoid nephrosis (9), acute transverse myelitis (9), ulcerative colitis (9), alcoholic hepatitis (9), spondyloarthropathy (9), aggressive periodontitis (9), endomyocardial fibrosis (9), brucellosis (9), hypersensitivity reaction type ii disease (9), appendicitis (9), aphthous stomatitis (9), trachoma (8), myasthenia gravis (8), melioidosis (8), scrub typhus (8), hyperlucent lung (8), bronchiolitis obliterans (8), beta-lactam allergy (8), hemorrhagic fever (8), parasitic protozoa infectious disease (8), pertussis (8), churg-strauss syndrome (8), pulmonary edema (8), pouchitis (8), polyradiculoneuropathy (8), aseptic meningitis (8), milk allergy (8), clonorchiasis (8), primary peritoneal carcinoma (8), poliomyelitis (8), hematopoietic stem cell transplantation (8), secondary progressive multiple sclerosis (8), viral encephalitis (8), extrinsic allergic alveolitis (8), multiple sclerosis, disease progression, modifier of (8), connective tissue disease (7), gastroenteritis (7), tick-borne encephalitis (7), food allergy (7), irritable bowel syndrome (7), aspergillosis (7), griscelli syndrome, type 2 (7), transverse myelitis (7), bacterial meningitis (7), griscelli syndrome (7), skin squamous cell carcinoma (7), multifocal choroiditis (7), complex regional pain syndrome (7), peritonitis (7), coccidiosis (7), chlamydia (7), toxoplasmosis (7), prostatitis (7), reactive arthritis (7), choroiditis (7), chronic fatigue syndrome (7), periodontitis (7), allergic contact dermatitis (7), selective iga deficiency disease (7), ascaridiasis (7), mitral valve disease (7), leprosy (7), bacterial vaginosis (7), mycetoma (7), intestinal disease (7), bronchiolitis (7), contact dermatitis (7), acquired immunodeficiency syndrome (6), autoinflammation, lipodystrophy, and dermatosis syndrome (6), arthritis (6), ureteral obstruction (6), acute pyelonephritis (6), cytomegalovirus infection (6), common variable immunodeficiency (6), hemorrhagic fever with renal syndrome (6), mixed connective tissue disease (6), rheumatic disease (6), meningitis (6), glucocorticoid resistance (6), autoimmune hemolytic anemia (6), idiopathic neutropenia (6), radiculopathy (6), peptic ulcer disease (6), candidiasis (6), miliaria rubra (6), chronic active epstein-barr virus infection (6), viral infectious disease (6), retinal artery occlusion (6), otitis media (6), extrinsic cardiomyopathy (6), kawasaki disease (6), apple allergy (6), pyelonephritis (6), keratitis (6), asthma (6), shigellosis (5), mumps (5), tungiasis (5), necatoriasis (5), endocarditis (5), parasitic helminthiasis infectious disease (5), primary bacterial infectious disease (5), pericardial tuberculosis (5), hepatitis c (5), listeriosis (5), retinitis pigmentosa 22 (5), baylisascariasis (5), herpes zoster (5), diarrhea 1, secretory chloride, congenital (5), atopic dermatitis (5), severe hemophilia a (5), alpha/beta t-cell lymphopenia with gamma/delta t-cell expansion, severe cytomegalovirus infection, and autoimmunity (5), hypersensitivity reaction disease (5), traumatic brain injury (5), retinitis pigmentosa 44 (5), necrotizing ulcerative gingivitis (5), omenn syndrome (4), sudden infant death syndrome (4), respiratory system disease (4), epstein-barr virus-associated gastric carcinoma (4), opportunistic mycosis (4), brain injury (4), lupus erythematosus (4), taeniasis (4), nasal cavity disease (4), allergic rhinitis (4), lung disease (4), bardet-biedl syndrome 15 (4), nose disease (4), skin disease (4), lymph node disease (4), atopy (3), crohn's disease (3), demyelinating disease (3), interstitial lung disease (3), eye disease (3), respiratory failure (3), wegener granulomatosis (3), hemophagocytic lymphohistiocytosis (2), arteriosclerosis (2), diabetes mellitus, insulin-dependent (2), immune system disease (2), stomach cancer (2), gastrointestinal system disease (2), bone inflammation disease (2), bronchial disease (2), upper respiratory tract disease (1), myocardial infarction (1), colorectal cancer (1), human immunodeficiency virus infectious disease (1), dilated cardiomyopathy (1), nervous system disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.03 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 25.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.2059-0.156 Picture PostScript Text
3' UTR -291.701034-0.282 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009079 - 4_helix_cytokine-like_core
IPR012351 - 4_helix_cytokine_core
IPR020443 - Interleukin-10/19/20/24
IPR020423 - Interleukin-10_CS
IPR000098 - Interleukin_10

Pfam Domains:
PF00726 - Interleukin 10
PF14565 - Interleukin 22 IL-10-related T-cell-derived-inducible factor

SCOP Domains:
47266 - 4-helical cytokines
48097 - Regulator of G-protein signaling, RGS

ModBase Predicted Comparative 3D Structure on Q6FGW4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005141 interleukin-10 receptor binding

Biological Process:
GO:0001818 negative regulation of cytokine production
GO:0001938 positive regulation of endothelial cell proliferation
GO:0002875 negative regulation of chronic inflammatory response to antigenic stimulus
GO:0006955 immune response
GO:0007568 aging
GO:0008285 negative regulation of cell proliferation
GO:0010033 response to organic substance
GO:0010469 regulation of receptor activity
GO:0014823 response to activity
GO:0014854 response to inactivity
GO:0030886 negative regulation of myeloid dendritic cell activation
GO:0032496 response to lipopolysaccharide
GO:0032689 negative regulation of interferon-gamma production
GO:0032692 negative regulation of interleukin-1 production
GO:0032695 negative regulation of interleukin-12 production
GO:0032701 negative regulation of interleukin-18 production
GO:0032715 negative regulation of interleukin-6 production
GO:0032717 negative regulation of interleukin-8 production
GO:0032720 negative regulation of tumor necrosis factor production
GO:0032868 response to insulin
GO:0034115 negative regulation of heterotypic cell-cell adhesion
GO:0034465 response to carbon monoxide
GO:0035729 cellular response to hepatocyte growth factor stimulus
GO:0042493 response to drug
GO:0042536 negative regulation of tumor necrosis factor biosynthetic process
GO:0042742 defense response to bacterium
GO:0042832 defense response to protozoan
GO:0043032 positive regulation of macrophage activation
GO:0043066 negative regulation of apoptotic process
GO:0044130 negative regulation of growth of symbiont in host
GO:0045019 negative regulation of nitric oxide biosynthetic process
GO:0045348 positive regulation of MHC class II biosynthetic process
GO:0045787 positive regulation of cell cycle
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050728 negative regulation of inflammatory response
GO:0050807 regulation of synapse organization
GO:0051384 response to glucocorticoid
GO:0051930 regulation of sensory perception of pain
GO:0060670 branching involved in labyrinthine layer morphogenesis
GO:0071222 cellular response to lipopolysaccharide
GO:0071392 cellular response to estradiol stimulus
GO:0071650 negative regulation of chemokine (C-C motif) ligand 5 production
GO:0097421 liver regeneration
GO:1903034 regulation of response to wounding
GO:1903208 negative regulation of hydrogen peroxide-induced neuron death
GO:1903672 positive regulation of sprouting angiogenesis
GO:1904057 negative regulation of sensory perception of pain
GO:1904706 negative regulation of vascular smooth muscle cell proliferation
GO:2000352 negative regulation of endothelial cell apoptotic process

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  M57627 - Human interleukin 10 (IL10) mRNA, complete cds.
BC022315 - Homo sapiens cDNA clone IMAGE:4691490, containing frame-shift errors.
JD114045 - Sequence 95069 from Patent EP1572962.
JD085156 - Sequence 66180 from Patent EP1572962.
JD510225 - Sequence 491249 from Patent EP1572962.
JD349918 - Sequence 330942 from Patent EP1572962.
JD182272 - Sequence 163296 from Patent EP1572962.
JD312759 - Sequence 293783 from Patent EP1572962.
JD171141 - Sequence 152165 from Patent EP1572962.
JD321000 - Sequence 302024 from Patent EP1572962.
JD041242 - Sequence 22266 from Patent EP1572962.
JD169214 - Sequence 150238 from Patent EP1572962.
JD529130 - Sequence 510154 from Patent EP1572962.
JD557315 - Sequence 538339 from Patent EP1572962.
JD430145 - Sequence 411169 from Patent EP1572962.
JD201263 - Sequence 182287 from Patent EP1572962.
JD388057 - Sequence 369081 from Patent EP1572962.
JD559655 - Sequence 540679 from Patent EP1572962.
JD029679 - Sequence 10703 from Patent EP1572962.
JD092496 - Sequence 73520 from Patent EP1572962.
JD144598 - Sequence 125622 from Patent EP1572962.
JD112314 - Sequence 93338 from Patent EP1572962.
JD395612 - Sequence 376636 from Patent EP1572962.
JD291755 - Sequence 272779 from Patent EP1572962.
JD236553 - Sequence 217577 from Patent EP1572962.
JD555341 - Sequence 536365 from Patent EP1572962.
JD188620 - Sequence 169644 from Patent EP1572962.
JD221352 - Sequence 202376 from Patent EP1572962.
BC104252 - Homo sapiens interleukin 10, mRNA (cDNA clone MGC:126450 IMAGE:40035920), complete cds.
BC104253 - Homo sapiens interleukin 10, mRNA (cDNA clone MGC:126451 IMAGE:40035922), complete cds.
JD417886 - Sequence 398910 from Patent EP1572962.
AF043333 - Homo sapiens interleukin 10 (IL10) mRNA, partial cds.
AY029171 - Homo sapiens interleukin 10 mRNA, complete cds.
CR541993 - Homo sapiens full open reading frame cDNA clone RZPDo834B0835D for gene IL10, interleukin 10; complete cds, incl. stopcodon.
KJ891463 - Synthetic construct Homo sapiens clone ccsbBroadEn_00857 IL10 gene, encodes complete protein.
KR711545 - Synthetic construct Homo sapiens clone CCSBHm_00025904 IL10 (IL10) mRNA, encodes complete protein.
KR711546 - Synthetic construct Homo sapiens clone CCSBHm_00025905 IL10 (IL10) mRNA, encodes complete protein.
CR542028 - Homo sapiens full open reading frame cDNA clone RZPDo834H0835D for gene IL10, interleukin 10; complete cds, without stopcodon.
AB587432 - Synthetic construct DNA, clone: pF1KB6855, Homo sapiens IL10 gene for interleukin 10, without stop codon, in Flexi system.
EU751618 - Homo sapiens clone 1 interleukin 10 (IL10) mRNA, 5' UTR and partial cds.
EU751619 - Homo sapiens clone 2 interleukin 10 (IL10) mRNA, 5' UTR and partial cds.
JD301717 - Sequence 282741 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_il10Pathway - IL-10 Anti-inflammatory Signaling Pathway
h_asbcellPathway - Antigen Dependent B Cell Activation
h_cytokinePathway - Cytokine Network
h_dcPathway - Dendritic cells in regulating TH1 and TH2 Development
h_inflamPathway - Cytokines and Inflammatory Response

-  Other Names for This Gene
  Alternate Gene Symbols: hCG_22208 , IF2A , IL10 , NR_168466, Q6FGW4, Q6FGW4_HUMAN, uc319svz.1, uc319svz.2
UCSC ID: ENST00000423557.1_8
RefSeq Accession: NM_000572.3
Protein: Q6FGW4

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.