Human Gene IL10RB (ENST00000290200.7_5) from GENCODE V47lift37
  Description: Shared cell surface receptor required for the activation of five class 2 cytokines: IL10, IL22, IL26, IL28, and IFNL1. The IFNLR1/IL10RB dimer is a receptor for the cytokine ligands IFNL2 and IFNL3 and mediates their antiviral activity. The ligand/receptor complex stimulate the activation of the JAK/STAT signaling pathway leading to the expression of IFN-stimulated genes (ISG), which contribute to the antiviral state. (from UniProt Q08334)
Gencode Transcript: ENST00000290200.7_5
Gencode Gene: ENSG00000243646.11_14
Transcript (Including UTRs)
   Position: hg19 chr21:34,638,672-34,669,526 Size: 30,855 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr21:34,638,771-34,668,662 Size: 29,892 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:34,638,672-34,669,526)mRNA (may differ from genome)Protein (325 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsHGNCMalacards
MGIPubMedReactomeUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: I10R2_HUMAN
DESCRIPTION: RecName: Full=Interleukin-10 receptor subunit beta; Short=IL-10 receptor subunit beta; Short=IL-10R subunit beta; Short=IL-10RB; AltName: Full=Cytokine receptor class-II member 4; AltName: Full=Cytokine receptor family 2 member 4; Short=CRF2-4; AltName: Full=Interleukin-10 receptor subunit 2; Short=IL-10R subunit 2; Short=IL-10R2; AltName: CD_antigen=CDw210b; Flags: Precursor;
FUNCTION: Shared cell surface receptor required for the activation of five class 2 cytokines: IL10, IL22, IL26, IL28, and IL29.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
POLYMORPHISM: Genetic variations in IL10RB influence susceptibility to hepatitis B virus (HBV) infection [MIM:610424].
DISEASE: Defects in IL10RB are the cause of inflammatory bowel disease type 25 (IBD25) [MIM:612567]. It is a chronic, relapsing inflammation of the gastrointestinal tract with a complex etiology. It is subdivided into Crohn disease and ulcerative colitis phenotypes. Crohn disease may affect any part of the gastrointestinal tract from the mouth to the anus, but most frequently it involves the terminal ileum and colon. Bowel inflammation is transmural and discontinuous; it may contain granulomas or be associated with intestinal or perianal fistulas. In contrast, in ulcerative colitis, the inflammation is continuous and limited to rectal and colonic mucosal layers; fistulas and granulomas are not observed. Both diseases include extraintestinal inflammation of the skin, eyes, or joints.
SIMILARITY: Belongs to the type II cytokine receptor family.
SIMILARITY: Contains 2 fibronectin type-III domains.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il10rb/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL10RB
Diseases sorted by gene-association score: inflammatory bowel disease 25, early onset, autosomal recessive* (850), colitis (19), crohn's disease (11), mumps (8), retinitis pigmentosa 75 (7), rubella (7), ulcerative colitis (5), inflammatory bowel disease (4), amyotrophic lateral sclerosis 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 56.20 RPKM in Whole Blood
Total median expression: 694.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -46.7099-0.472 Picture PostScript Text
3' UTR -259.60864-0.300 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR013783 - Ig-like_fold
IPR015373 - Interferon_alpha/beta_rcpt_bsu

Pfam Domains:
PF01108 - Tissue factor
PF09294 - Interferon-alpha/beta receptor, fibronectin type III

SCOP Domains:
49265 - Fibronectin type III

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3LQM - X-ray


ModBase Predicted Comparative 3D Structure on Q08334
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0038023 signaling receptor activity
GO:0004920 interleukin-10 receptor activity

Biological Process:
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0007165 signal transduction
GO:0019221 cytokine-mediated signaling pathway
GO:0051607 defense response to virus

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0032002 interleukin-28 receptor complex


-  Descriptions from all associated GenBank mRNAs
  DQ655960 - Homo sapiens clone UGL9b05, mRNA sequence.
DQ655961 - Homo sapiens clone UGL9d05, mRNA sequence.
AK313348 - Homo sapiens cDNA, FLJ93872.
LF385144 - JP 2014500723-A/192647: Polycomb-Associated Non-Coding RNAs.
BC001903 - Homo sapiens interleukin 10 receptor, beta, mRNA (cDNA clone MGC:2210 IMAGE:3544611), complete cds.
DQ655970 - Homo sapiens clone UGL9a06, mRNA sequence.
JD519071 - Sequence 500095 from Patent EP1572962.
Z17227 - Homo sapiens mRNA for transmebrane receptor protein.
AK299961 - Homo sapiens cDNA FLJ61381 complete cds, highly similar to Interleukin-10 receptor beta chain precursor.
AB590138 - Synthetic construct DNA, clone: pFN21AE1407, Homo sapiens IL10RB gene for interleukin 10 receptor, beta, without stop codon, in Flexi system.
DQ895763 - Synthetic construct Homo sapiens clone IMAGE:100010223; FLH187405.01L; RZPDo839G1262D interleukin 10 receptor, beta (IL10RB) gene, encodes complete protein.
DQ892552 - Synthetic construct clone IMAGE:100005182; FLH187409.01X; RZPDo839G1272D interleukin 10 receptor, beta (IL10RB) gene, encodes complete protein.
BT009777 - Homo sapiens interleukin 10 receptor, beta mRNA, complete cds.
JN591378 - Homo sapiens interleukin 10 beta receptor (IL10RB) mRNA, complete cds.
AK124057 - Homo sapiens cDNA FLJ42063 fis, clone SYNOV2005817, highly similar to CYTOKINE RECEPTOR CLASS-II CRF2-4 PRECURSOR.
LF339896 - JP 2014500723-A/147399: Polycomb-Associated Non-Coding RNAs.
LF339898 - JP 2014500723-A/147401: Polycomb-Associated Non-Coding RNAs.
JD406474 - Sequence 387498 from Patent EP1572962.
LF339899 - JP 2014500723-A/147402: Polycomb-Associated Non-Coding RNAs.
JD437264 - Sequence 418288 from Patent EP1572962.
JD367009 - Sequence 348033 from Patent EP1572962.
JD149868 - Sequence 130892 from Patent EP1572962.
LF339900 - JP 2014500723-A/147403: Polycomb-Associated Non-Coding RNAs.
JD382250 - Sequence 363274 from Patent EP1572962.
JD313514 - Sequence 294538 from Patent EP1572962.
JD324887 - Sequence 305911 from Patent EP1572962.
JD307913 - Sequence 288937 from Patent EP1572962.
JD098837 - Sequence 79861 from Patent EP1572962.
JD246823 - Sequence 227847 from Patent EP1572962.
JD429398 - Sequence 410422 from Patent EP1572962.
MS881484 - Sequence 45 from Patent EP3171879.
JD159088 - Sequence 140112 from Patent EP1572962.
JD208999 - Sequence 190023 from Patent EP1572962.
JD488572 - Sequence 469596 from Patent EP1572962.
JD377708 - Sequence 358732 from Patent EP1572962.
JD377709 - Sequence 358733 from Patent EP1572962.
JD478067 - Sequence 459091 from Patent EP1572962.
JD130980 - Sequence 112004 from Patent EP1572962.
JD047623 - Sequence 28647 from Patent EP1572962.
JD421516 - Sequence 402540 from Patent EP1572962.
JD452705 - Sequence 433729 from Patent EP1572962.
JD377284 - Sequence 358308 from Patent EP1572962.
JD404396 - Sequence 385420 from Patent EP1572962.
JD192052 - Sequence 173076 from Patent EP1572962.
JD125565 - Sequence 106589 from Patent EP1572962.
JD443379 - Sequence 424403 from Patent EP1572962.
JD138138 - Sequence 119162 from Patent EP1572962.
JD175518 - Sequence 156542 from Patent EP1572962.
JD331597 - Sequence 312621 from Patent EP1572962.
JD182117 - Sequence 163141 from Patent EP1572962.
JD462421 - Sequence 443445 from Patent EP1572962.
JD141996 - Sequence 123020 from Patent EP1572962.
JD088284 - Sequence 69308 from Patent EP1572962.
JD333493 - Sequence 314517 from Patent EP1572962.
LF339901 - JP 2014500723-A/147404: Polycomb-Associated Non-Coding RNAs.
MA620721 - JP 2018138019-A/192647: Polycomb-Associated Non-Coding RNAs.
MA575473 - JP 2018138019-A/147399: Polycomb-Associated Non-Coding RNAs.
MA575475 - JP 2018138019-A/147401: Polycomb-Associated Non-Coding RNAs.
MA575476 - JP 2018138019-A/147402: Polycomb-Associated Non-Coding RNAs.
MA575477 - JP 2018138019-A/147403: Polycomb-Associated Non-Coding RNAs.
MA575478 - JP 2018138019-A/147404: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_il10Pathway - IL-10 Anti-inflammatory Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q08334 (Reactome details) participates in the following event(s):

R-HSA-8987223 IL10RB binds TYK2
R-HSA-448661 IFNL1 binds IL10RB:TYK2 and IFNLR1:JAK1
R-HSA-449811 IL10 dimer:2xIL10RA1:JAK1 binds IL10RB:TYK2
R-HSA-8854645 IL22:IL22RA1:JAK1 binds IL10RB:TYK2
R-HSA-8986480 IL26:IL20RA:JAK1 binds IL10RB:TYK2
R-HSA-6784323 IL10 dimer:2xp-Y-IL10RA:p-Y-JAK1:2xIL10RB:p-Y-TYK2 binds STAT3
R-HSA-6784791 p-Y705-STAT3 dissociates from IL10 dimer:2xp-Y-IL10RA:p-Y-JAK1:2xIL10RB:p-Y-TYK2:p-Y705-STAT3
R-HSA-8987040 IFNL1:IFNLR1:p‑JAK1:IL10RB:p‑TYK2 phosphorylates IFNLR1
R-HSA-8987132 IL22:p‑Y251,p‑Y301‑IL22RA1:p‑JAK1:PTPN11:IL10RB:p‑TYK2 binds PTPN11
R-HSA-6784006 STAT3 is phosphorylated by p-Y-JAK1,P-Y-TYK2
R-HSA-8854691 Interleukin-20 family signaling
R-HSA-449836 Other interleukin signaling
R-HSA-6783783 Interleukin-10 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: CRFB4, D21S58, D21S66, ENST00000290200.1, ENST00000290200.2, ENST00000290200.3, ENST00000290200.4, ENST00000290200.5, ENST00000290200.6, I10R2_HUMAN, NM_001406840, Q08334, Q9BUU4, uc317kty.1, uc317kty.2
UCSC ID: ENST00000290200.7_5
RefSeq Accession: NM_000628.5
Protein: Q08334 (aka I10R2_HUMAN or I10S_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.