Human Gene IL13RA1 (ENST00000371666.8_6) from GENCODE V47lift37
  Description: interleukin 13 receptor subunit alpha 1 (from RefSeq NM_001560.3)
Gencode Transcript: ENST00000371666.8_6
Gencode Gene: ENSG00000131724.11_11
Transcript (Including UTRs)
   Position: hg19 chrX:117,861,569-117,928,496 Size: 66,928 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chrX:117,861,602-117,925,817 Size: 64,216 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:117,861,569-117,928,496)mRNA (may differ from genome)Protein (427 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: I13R1_HUMAN
DESCRIPTION: RecName: Full=Interleukin-13 receptor subunit alpha-1; Short=IL-13 receptor subunit alpha-1; Short=IL-13R subunit alpha-1; Short=IL-13R-alpha-1; Short=IL-13RA1; AltName: Full=Cancer/testis antigen 19; Short=CT19; AltName: CD_antigen=CD213a1; Flags: Precursor;
FUNCTION: Binds with low affinity to interleukin-13 (IL13). Together with IL4RA can form a functional receptor for IL13. Also serves as an alternate accessory protein to the common cytokine receptor gamma chain for interleukin-4 (IL4) signaling, but cannot replace the function of IL2RG in allowing enhanced interleukin-2 (IL2) binding activity.
SUBUNIT: Interleukin-13 receptor is a complex of IL4R, IL13RA1, and possibly other components. Interacts with TRAF3IP1.
INTERACTION: P35225:IL13; NbExp=4; IntAct=EBI-1391535, EBI-1647828; P05112:IL4; NbExp=3; IntAct=EBI-1391535, EBI-367025; Q8TDR0:TRAF3IP1; NbExp=3; IntAct=EBI-1391535, EBI-928811;
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Ubiquitous. Highest levels in heart, liver, skeletal muscle and ovary; lowest levels in brain, lung and kidney. Also found in B-cells, T-cells and endothelial cells.
DOMAIN: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell- surface receptor binding.
DOMAIN: The box 1 motif is required for JAK interaction and/or activation.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 5 subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL13RA1
Diseases sorted by gene-association score: malignant glioma (3), oral cavity cancer (1), limited scleroderma (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.45 RPKM in Adipose - Subcutaneous
Total median expression: 699.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.9033-0.391 Picture PostScript Text
3' UTR -787.402679-0.294 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR013783 - Ig-like_fold
IPR015321 - IL6_recept-bd
IPR003532 - Short_hematopoietin_rcpt_2_CS

Pfam Domains:
PF09240 - Interleukin-6 receptor alpha chain, binding
PF18001 - Interleukin-13 receptor subunit alpha Ig-like domain

SCOP Domains:
49354 - PapD-like
49265 - Fibronectin type III
54160 - Chromo domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3BPN - X-ray MuPIT 3BPO - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P78552
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004896 cytokine receptor activity
GO:0005515 protein binding

Biological Process:
GO:0007166 cell surface receptor signaling pathway
GO:0019221 cytokine-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0005898 interleukin-13 receptor complex
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC015768 - Homo sapiens interleukin 13 receptor, alpha 1, mRNA (cDNA clone MGC:23204 IMAGE:4868206), complete cds.
Y10659 - H.sapiens IL-13Ra mRNA.
U81380 - Human interleukin-13 receptor soluble form mRNA, complete cds.
U81379 - Homo sapiens interleukin-13 receptor mRNA, complete cds.
AK313467 - Homo sapiens cDNA, FLJ94013, Homo sapiens interleukin 13 receptor, alpha 1 (IL13RA1), mRNA.
Y09328 - H.sapiens mRNA for IL13 receptor alpha-1 chain.
U62858 - Human interleukin-13 receptor mRNA, complete cds.
BC009960 - Homo sapiens interleukin 13 receptor, alpha 1, mRNA (cDNA clone MGC:15228 IMAGE:4300487), complete cds.
JD476321 - Sequence 457345 from Patent EP1572962.
JD459103 - Sequence 440127 from Patent EP1572962.
KJ891467 - Synthetic construct Homo sapiens clone ccsbBroadEn_00861 IL13RA1 gene, encodes complete protein.
AB528371 - Synthetic construct DNA, clone: pF1KB6683, Homo sapiens IL13RA1 gene for interleukin 13 receptor, alpha 1, without stop codon, in Flexi system.
DQ893454 - Synthetic construct clone IMAGE:100006084; FLH193048.01X; RZPDo839C0578D interleukin 13 receptor, alpha 1 (IL13RA1) gene, encodes complete protein.
DQ896296 - Synthetic construct Homo sapiens clone IMAGE:100010756; FLH193044.01L; RZPDo839C0568D interleukin 13 receptor, alpha 1 (IL13RA1) gene, encodes complete protein.
AB209849 - Homo sapiens mRNA for interleukin 13 receptor, alpha 1 precursor variant protein.
AK296958 - Homo sapiens cDNA FLJ56594 complete cds, highly similar to Interleukin-13 receptor alpha-1 chain precursor.
AK123515 - Homo sapiens cDNA FLJ41521 fis, clone BRTHA2012980, moderately similar to INTERLEUKIN-13 RECEPTOR ALPHA-1 CHAIN PRECURSOR (IL-13R-ALPHA-1) (IL- 13RA-1).
JD181894 - Sequence 162918 from Patent EP1572962.
JD061137 - Sequence 42161 from Patent EP1572962.
JD493079 - Sequence 474103 from Patent EP1572962.
JD453172 - Sequence 434196 from Patent EP1572962.
JD445581 - Sequence 426605 from Patent EP1572962.
JD413360 - Sequence 394384 from Patent EP1572962.
JD246881 - Sequence 227905 from Patent EP1572962.
JD096652 - Sequence 77676 from Patent EP1572962.
JD138926 - Sequence 119950 from Patent EP1572962.
JD076525 - Sequence 57549 from Patent EP1572962.
JD462361 - Sequence 443385 from Patent EP1572962.
JD383831 - Sequence 364855 from Patent EP1572962.
JD420068 - Sequence 401092 from Patent EP1572962.
JD438791 - Sequence 419815 from Patent EP1572962.
JD132806 - Sequence 113830 from Patent EP1572962.
JD417754 - Sequence 398778 from Patent EP1572962.
JD256936 - Sequence 237960 from Patent EP1572962.
JD214584 - Sequence 195608 from Patent EP1572962.
JD522162 - Sequence 503186 from Patent EP1572962.
JD370955 - Sequence 351979 from Patent EP1572962.
JD123522 - Sequence 104546 from Patent EP1572962.
JD549535 - Sequence 530559 from Patent EP1572962.
JD390145 - Sequence 371169 from Patent EP1572962.
JD329405 - Sequence 310429 from Patent EP1572962.
JD228135 - Sequence 209159 from Patent EP1572962.
JD299340 - Sequence 280364 from Patent EP1572962.
JD250731 - Sequence 231755 from Patent EP1572962.
JD236495 - Sequence 217519 from Patent EP1572962.
JD155387 - Sequence 136411 from Patent EP1572962.
JD110817 - Sequence 91841 from Patent EP1572962.
JD350604 - Sequence 331628 from Patent EP1572962.
JD269229 - Sequence 250253 from Patent EP1572962.
JD493389 - Sequence 474413 from Patent EP1572962.
JD294808 - Sequence 275832 from Patent EP1572962.
JD510346 - Sequence 491370 from Patent EP1572962.
JD120664 - Sequence 101688 from Patent EP1572962.
JD554752 - Sequence 535776 from Patent EP1572962.
JD121657 - Sequence 102681 from Patent EP1572962.
JD120253 - Sequence 101277 from Patent EP1572962.
JD288804 - Sequence 269828 from Patent EP1572962.
JD048778 - Sequence 29802 from Patent EP1572962.
JD486241 - Sequence 467265 from Patent EP1572962.
JD208310 - Sequence 189334 from Patent EP1572962.
JD259471 - Sequence 240495 from Patent EP1572962.
JD041494 - Sequence 22518 from Patent EP1572962.
JD549567 - Sequence 530591 from Patent EP1572962.
JD245096 - Sequence 226120 from Patent EP1572962.
JD375129 - Sequence 356153 from Patent EP1572962.
JD301210 - Sequence 282234 from Patent EP1572962.
JD343397 - Sequence 324421 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P78552 (Reactome details) participates in the following event(s):

R-HSA-6785762 IL13RA1 binds TYK2
R-HSA-6786070 IL4:IL4R:JAK2 binds IL13RA1:TYK2
R-HSA-6786118 IL13 binds IL13RA:TYK2
R-HSA-6786114 IL13:IL13RA:TYK2 binds IL4R:JAK2
R-HSA-6785821 SOCS5,(SOCS1) bind IL4RA
R-HSA-6788571 STAT1,STAT3,STAT6 bind IL13:IL13R type II
R-HSA-6788582 STAT1,STAT3,STAT6 phosphorylation
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000371666.1, ENST00000371666.2, ENST00000371666.3, ENST00000371666.4, ENST00000371666.5, ENST00000371666.6, ENST00000371666.7, I13R1_HUMAN, IL13R, IL13RA, NM_001560, O95646, P78552, Q5JSL4, Q99656, Q9UDY5, uc318jht.1, uc318jht.2
UCSC ID: ENST00000371666.8_6
RefSeq Accession: NM_001560.3
Protein: P78552 (aka I13R1_HUMAN or I131_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.