Human Gene IL21 (ENST00000648588.1_8) from GENCODE V47lift37
  Description: interleukin 21, transcript variant 1 (from RefSeq NM_021803.4)
Gencode Transcript: ENST00000648588.1_8
Gencode Gene: ENSG00000138684.9_14
Transcript (Including UTRs)
   Position: hg19 chr4:123,531,263-123,542,221 Size: 10,959 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr4:123,533,865-123,542,166 Size: 8,302 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:123,531,263-123,542,221)mRNA (may differ from genome)Protein (162 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL21_HUMAN
DESCRIPTION: RecName: Full=Interleukin-21; Short=IL-21; AltName: Full=Za11; Flags: Precursor;
FUNCTION: Cytokine with immunoregulatory activity. May promote the transition between innate and adaptive immunity. Induces the production of IgG(1) and IgG(3) in B-cells (By similarity). May play a role in proliferation and maturation of natural killer (NK) cells in synergy with IL15. May regulate proliferation of mature B- and T-cells in response to activating stimuli. In synergy with IL15 and IL18 stimulates interferon gamma production in T-cells and NK cells. During T-cell mediated immune response may inhibit dendritic cells (DC) activation and maturation.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed in activated CD4-positive T-cells but not in CD8-positive T-cells, B-cells, or monocytes.
SIMILARITY: Belongs to the IL-15/IL-21 family.
SEQUENCE CAUTION: Sequence=AAG29348.1; Type=Erroneous initiation; Sequence=AAH66258.1; Type=Erroneous initiation; Sequence=AAH66259.1; Type=Erroneous initiation; Sequence=AAH66260.1; Type=Erroneous initiation; Sequence=AAH66261.1; Type=Erroneous initiation; Sequence=AAH66262.1; Type=Erroneous initiation; Sequence=AAH69124.1; Type=Erroneous initiation; Sequence=AAU88182.1; Type=Erroneous initiation; Sequence=ABG36529.1; Type=Erroneous initiation;
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il21/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL21
Diseases sorted by gene-association score: immunodeficiency, common variable, 11* (1629), mikulicz disease (22), dacryoadenitis (22), severe combined immunodeficiency, x-linked (8), inflammatory bowel disease (6), multicentric castleman disease (5), common variable immunodeficiency (2), renal cell carcinoma (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.9055-0.198 Picture PostScript Text
3' UTR -573.002602-0.220 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003443 - Interleukin_15-like

Pfam Domains:
PF02372 - Interleukin 15

SCOP Domains:
47266 - 4-helical cytokines

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2OQP - NMR MuPIT 3TGX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9HBE4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005126 cytokine receptor binding
GO:0005134 interleukin-2 receptor binding

Biological Process:
GO:0001819 positive regulation of cytokine production
GO:0006955 immune response
GO:0007165 signal transduction
GO:0007260 tyrosine phosphorylation of STAT protein
GO:0008284 positive regulation of cell proliferation
GO:0010469 regulation of receptor activity
GO:0030890 positive regulation of B cell proliferation
GO:0032740 positive regulation of interleukin-17 production
GO:0034105 positive regulation of tissue remodeling
GO:0038114 interleukin-21-mediated signaling pathway
GO:0042102 positive regulation of T cell proliferation
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0045078 positive regulation of interferon-gamma biosynthetic process
GO:0045954 positive regulation of natural killer cell mediated cytotoxicity
GO:0048469 cell maturation
GO:0050729 positive regulation of inflammatory response

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005622 intracellular


-  Descriptions from all associated GenBank mRNAs
  LC133256 - Homo sapiens IL-21 mRNA for interleukin-21, complete cds.
BC069124 - Homo sapiens interleukin 21, mRNA (cDNA clone MGC:95404 IMAGE:7216979), complete cds.
AF254069 - Homo sapiens interleukin 21 (IL21) mRNA, complete cds.
BC066258 - Homo sapiens interleukin 21, mRNA (cDNA clone MGC:79376 IMAGE:6971861), complete cds.
BC066259 - Homo sapiens interleukin 21, mRNA (cDNA clone MGC:79377 IMAGE:6971862), complete cds.
BC066261 - Homo sapiens interleukin 21, mRNA (cDNA clone MGC:79379 IMAGE:6971865), complete cds.
BC066262 - Homo sapiens interleukin 21, mRNA (cDNA clone MGC:79380 IMAGE:6971866), complete cds.
BC066260 - Homo sapiens interleukin 21, mRNA (cDNA clone MGC:79378 IMAGE:6971863), complete cds.
JD057529 - Sequence 38553 from Patent EP1572962.
DQ645417 - Homo sapiens interleukin-21 isoform mRNA, complete cds.
HQ447458 - Synthetic construct Homo sapiens clone IMAGE:100070787; CCSB014605_02 interleukin 21 (IL21) gene, encodes complete protein.
KJ906284 - Synthetic construct Homo sapiens clone ccsbBroadEn_15954 IL21 gene, encodes complete protein.
KJ899390 - Synthetic construct Homo sapiens clone ccsbBroadEn_08784 IL21 gene, encodes complete protein.
CU688122 - Synthetic construct Homo sapiens gateway clone IMAGE:100022893 5' read IL21 mRNA.
CU688120 - Synthetic construct Homo sapiens gateway clone IMAGE:100022903 5' read IL21 mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HBE4 (Reactome details) participates in the following event(s):

R-HSA-9020958 Interleukin-21 signaling
R-HSA-451927 Interleukin-2 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A5J0L4, IL21 , IL21_HUMAN, NM_021803, Q9HBE4, uc328pap.1, uc328pap.2
UCSC ID: ENST00000648588.1_8
RefSeq Accession: NM_021803.4
Protein: Q9HBE4 (aka IL21_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.