Human Gene IL21R (ENST00000337929.8_4) from GENCODE V47lift37
  Description: interleukin 21 receptor, transcript variant 2 (from RefSeq NM_181078.3)
Gencode Transcript: ENST00000337929.8_4
Gencode Gene: ENSG00000103522.17_8
Transcript (Including UTRs)
   Position: hg19 chr16:27,413,495-27,463,363 Size: 49,869 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr16:27,441,393-27,460,604 Size: 19,212 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:27,413,495-27,463,363)mRNA (may differ from genome)Protein (538 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL21R_HUMAN
DESCRIPTION: RecName: Full=Interleukin-21 receptor; Short=IL-21 receptor; Short=IL-21R; AltName: Full=Novel interleukin receptor; AltName: CD_antigen=CD360; Flags: Precursor;
FUNCTION: This is a receptor for interleukin-21.
SUBUNIT: Heterodimer with the common gamma subunit. Associates with JAK1.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Selectively expressed in lymphoid tissues. Most highly expressed in thymus and spleen.
DOMAIN: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell- surface receptor binding.
DOMAIN: The box 1 motif is required for JAK interaction and/or activation.
PTM: C-mannosylated at Trp-214 in the WSXWS motif, the sugar chain makes extensive hydrogen bonds with Asn-73 sugar, and bridges the two fibronectin domains transforming the V-shaped receptor into an A-frame.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 4 subfamily.
SIMILARITY: Contains 2 fibronectin type-III domains.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org//Genes/IL21RID40955ch16p12.html";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il21r/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL21R
Diseases sorted by gene-association score: immunodeficiency, primary, autosomal recessive, il21r-related* (1550), il21r-related immunodeficiency* (100), beta-lactam allergy (11), chronic cholangitis (7), smoldering myeloma (7), human monocytic ehrlichiosis (5), inflammatory bowel disease (4), common variable immunodeficiency (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.28 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 62.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -174.70461-0.379 Picture PostScript Text
3' UTR -1127.702759-0.409 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR003531 - Hempt_rcpt_S_F1_CS
IPR013783 - Ig-like_fold

SCOP Domains:
49265 - Fibronectin type III

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3TGX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9HBE5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001532 interleukin-21 receptor activity
GO:0004896 cytokine receptor activity

Biological Process:
GO:0030101 natural killer cell activation
GO:0038114 interleukin-21-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK292663 - Homo sapiens cDNA FLJ77832 complete cds, highly similar to Homo sapiens novel interleukin receptor (NILR) mRNA.
AK312825 - Homo sapiens cDNA, FLJ93262, highly similar to Homo sapiens interleukin 21 receptor (IL21R), mRNA.
JD183640 - Sequence 164664 from Patent EP1572962.
JD424584 - Sequence 405608 from Patent EP1572962.
BC004348 - Homo sapiens interleukin 21 receptor, mRNA (cDNA clone MGC:10967 IMAGE:3634520), complete cds.
JD457763 - Sequence 438787 from Patent EP1572962.
AF269133 - Homo sapiens novel interleukin receptor (NILR) mRNA, complete cds.
AY358826 - Homo sapiens clone DNA144867 IL21R (UNQ3121) mRNA, complete cds.
AF254067 - Homo sapiens interleukin 21 receptor (IL21R) mRNA, complete cds.
CU678678 - Synthetic construct Homo sapiens gateway clone IMAGE:100020288 5' read IL21R mRNA.
KJ893754 - Synthetic construct Homo sapiens clone ccsbBroadEn_03148 IL21R gene, encodes complete protein.
AB528333 - Synthetic construct DNA, clone: pF1KB5930, Homo sapiens IL21R gene for interleukin 21 receptor, without stop codon, in Flexi system.
DQ896727 - Synthetic construct Homo sapiens clone IMAGE:100011187; FLH199391.01L; RZPDo839D0581D interleukin 21 receptor (IL21R) gene, encodes complete protein.
EU176411 - Synthetic construct Homo sapiens clone IMAGE:100006535; FLH196981.01X; RZPDo839B05252D interleukin 21 receptor (IL21R) gene, encodes complete protein.
BC007946 - Homo sapiens interleukin 21 receptor, mRNA (cDNA clone IMAGE:4297745), partial cds.
JD400442 - Sequence 381466 from Patent EP1572962.
JD368646 - Sequence 349670 from Patent EP1572962.
JD118826 - Sequence 99850 from Patent EP1572962.
JD492193 - Sequence 473217 from Patent EP1572962.
JD437781 - Sequence 418805 from Patent EP1572962.
JD460455 - Sequence 441479 from Patent EP1572962.
JD287381 - Sequence 268405 from Patent EP1572962.
JD157612 - Sequence 138636 from Patent EP1572962.
JD396547 - Sequence 377571 from Patent EP1572962.
JD383589 - Sequence 364613 from Patent EP1572962.
JD518379 - Sequence 499403 from Patent EP1572962.
JD484268 - Sequence 465292 from Patent EP1572962.
JD217625 - Sequence 198649 from Patent EP1572962.
JD051802 - Sequence 32826 from Patent EP1572962.
JD190084 - Sequence 171108 from Patent EP1572962.
JD512206 - Sequence 493230 from Patent EP1572962.
JD125000 - Sequence 106024 from Patent EP1572962.
JD520872 - Sequence 501896 from Patent EP1572962.
JD355248 - Sequence 336272 from Patent EP1572962.
JD298921 - Sequence 279945 from Patent EP1572962.
JD048816 - Sequence 29840 from Patent EP1572962.
JD088901 - Sequence 69925 from Patent EP1572962.
JD268602 - Sequence 249626 from Patent EP1572962.
JD180713 - Sequence 161737 from Patent EP1572962.
JD247433 - Sequence 228457 from Patent EP1572962.
JD325629 - Sequence 306653 from Patent EP1572962.
JD353171 - Sequence 334195 from Patent EP1572962.
JD258878 - Sequence 239902 from Patent EP1572962.
JD256887 - Sequence 237911 from Patent EP1572962.
JD407785 - Sequence 388809 from Patent EP1572962.
JD479171 - Sequence 460195 from Patent EP1572962.
JD047644 - Sequence 28668 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HBE5 (Reactome details) participates in the following event(s):

R-HSA-9020958 Interleukin-21 signaling
R-HSA-451927 Interleukin-2 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K9E8, D3DWF7, ENST00000337929.1, ENST00000337929.2, ENST00000337929.3, ENST00000337929.4, ENST00000337929.5, ENST00000337929.6, ENST00000337929.7, IL21R_HUMAN, NILR, NM_181078, Q96HZ1, Q9HB91, Q9HBE5, uc317uwq.1, uc317uwq.2, UNQ3121/PRO10273
UCSC ID: ENST00000337929.8_4
RefSeq Accession: NM_181078.3
Protein: Q9HBE5 (aka IL21R_HUMAN or I21R_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.