Human Gene IL27 (ENST00000356897.1_10) from GENCODE V47lift37
  Description: interleukin 27 (from RefSeq NM_145659.3)
Gencode Transcript: ENST00000356897.1_10
Gencode Gene: ENSG00000197272.2_12
Transcript (Including UTRs)
   Position: hg19 chr16:28,510,683-28,518,155 Size: 7,473 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr16:28,510,972-28,518,132 Size: 7,161 Coding Exon Count: 5 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:28,510,683-28,518,155)mRNA (may differ from genome)Protein (243 aa)
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-  Comments and Description Text from UniProtKB
  ID: IL27A_HUMAN
DESCRIPTION: RecName: Full=Interleukin-27 subunit alpha; Short=IL-27 subunit alpha; Short=IL-27-A; Short=IL27-A; AltName: Full=p28; Flags: Precursor;
FUNCTION: Cytokine with pro- and anti-inflammatory properties, that can regulate T-helper cell development, suppress T-cell proliferation, stimulate cytotoxic T-cell activity, induce isotype switching in B-cells, and that has diverse effects on innate immune cells. Among its target cells are CD4 T-helper cells which can differentiate in type 1 effector cells (TH1), type 2 effector cells (TH2) and IL17 producing helper T-cells (TH17). It drives rapid clonal expansion of naive but not memory CD4 T-cells. It also strongly synergizes with IL-12 to trigger interferon- gamma/IFN-gamma production of naive CD4 T-cells, binds to the cytokine receptor WSX-1/TCCR which appears to be required but not sufficient for IL-27-mediated signal transduction. IL-27 potentiate the early phase of TH1 response and suppress TH2 and TH17 differentiation. It induces the differentiation of TH1 cells via two distinct pathways, p38 MAPK/TBX21- and ICAM1/ITGAL/ERK- dependent pathways. It also induces STAT1, STAT3, STAT4 and STAT5 phosphorylation and activates TBX21/T-Bet via STAT1 with resulting IL12RB2 up-regulation, an event crucial to TH1 cell commitment. It suppresses the expression of GATA3, the inhibitor TH1 cells development. In CD8 T-cells, it activates STATs as well as GZMB. IL-27 reveals to be a potent inhibitor of TH17 cell development and of IL-17 production. Indeed IL-27 subunit p28 alone is also able to inhibit the production of IL17 by CD4 and CD8 T-cells. While IL-27 suppressed the development of proinflammatory Th17 cells via STAT1, it inhibits the development of anti-inflammatory inducible regulatory T-cells, iTreg, independently of STAT1. IL-27 has also an effect on cytokine production, it suppresses proinflammatory cytokine production such as IL2, IL4, IL5 and IL6 and activates suppressors of cytokine signaling such as SOCS1 and SOCS3. Apart from suppression of cytokine production, IL-27 also antagonizes the effects of some cytokines such as IL6 through direct effects on T-cells. Another important role of IL-27 is its antitumor activity as well as its antiangiogenic activity with activation of production of antiangiogenic chemokines such as IP- 10/CXCL10 and MIG/CXCL9. In vein endothelial cells, it induces IRF1/interferon regulatory factor 1 and increase the expression of MHC class II transactivator/CIITA with resulting up-regulation of major histocompatibility complex class II. IL-27 also demonstrates antiviral activity with inhibitory properties on HIV-1 replivation.
SUBUNIT: Heterodimer with IL27B/EBI3. IL-27 is a heterodimer composed IL27 and EBI3. EBI3 is also a component of the IL-12 heterodimer.
SUBCELLULAR LOCATION: Secreted. Note=Does not seem to be secreted without coexpression of EBI3.
TISSUE SPECIFICITY: Expressed in monocytes and in placenta.
INDUCTION: Transiently induced by bacterial lipopolysaccharides (LPS) stimulation in monocytes.
PTM: O-glycosylated (Probable).
SIMILARITY: Belongs to the IL-6 superfamily.
WEB RESOURCE: Name=Wikipedia; Note=Interleukin-27 entry; URL="http://en.wikipedia.org/wiki/Interleukin_27";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL27
Diseases sorted by gene-association score: eosinophilic granulomatosis with polyangiitis (18), visceral leishmaniasis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.47 RPKM in Liver
Total median expression: 10.25 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.4023-0.148 Picture PostScript Text
3' UTR -93.20289-0.322 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026207 - IL27-A

SCOP Domains:
47266 - 4-helical cytokines

ModBase Predicted Comparative 3D Structure on Q8NEV9
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005125 cytokine activity
GO:0005515 protein binding
GO:0045523 interleukin-27 receptor binding

Biological Process:
GO:0002230 positive regulation of defense response to virus by host
GO:0002376 immune system process
GO:0006954 inflammatory response
GO:0009617 response to bacterium
GO:0010469 regulation of receptor activity
GO:0042129 regulation of T cell proliferation
GO:0045078 positive regulation of interferon-gamma biosynthetic process
GO:0045087 innate immune response
GO:0045625 regulation of T-helper 1 cell differentiation
GO:0050688 regulation of defense response to virus
GO:0070106 interleukin-27-mediated signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005788 endoplasmic reticulum lumen
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC062422 - Homo sapiens interleukin 27, mRNA (cDNA clone MGC:71873 IMAGE:4703457), complete cds.
AY099296 - Homo sapiens IL-27 p28 subunit mRNA, complete cds.
HQ447563 - Synthetic construct Homo sapiens clone IMAGE:100070904; CCSB014847_01 interleukin 27 (IL27) gene, encodes complete protein.
CU687548 - Synthetic construct Homo sapiens gateway clone IMAGE:100023115 5' read IL27 mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8NEV9 (Reactome details) participates in the following event(s):

R-HSA-448427 Interleukin-27 binds Interleukin-27 receptor
R-HSA-8950210 Interleukin-27 dissociates from Interleukin-27 receptor
R-HSA-9020956 Interleukin-27 signaling
R-HSA-447115 Interleukin-12 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A0N0L2, IL27A, IL27A_HUMAN, IL30, NM_145659, Q6P676, Q8NEV9, uc317ztz.1, uc317ztz.2
UCSC ID: ENST00000356897.1_10
RefSeq Accession: NM_145659.3
Protein: Q8NEV9 (aka IL27A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.