Human Gene IL31 (ENST00000377035.2_7) from GENCODE V47lift37
  Description: interleukin 31 (from RefSeq NM_001014336.2)
Gencode Transcript: ENST00000377035.2_7
Gencode Gene: ENSG00000204671.2_9
Transcript (Including UTRs)
   Position: hg19 chr12:122,656,576-122,658,768 Size: 2,193 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr12:122,656,959-122,658,719 Size: 1,761 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:122,656,576-122,658,768)mRNA (may differ from genome)Protein (164 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL31_HUMAN
DESCRIPTION: RecName: Full=Interleukin-31; Short=IL-31; Flags: Precursor;
FUNCTION: Activates STAT3 and possibly STAT1 and STAT5 through the IL31 heterodimeric receptor composed of IL31RA and OSMR. IL31 may function in skin immunity.
SUBCELLULAR LOCATION: Secreted (Probable).
TISSUE SPECIFICITY: Detected at low levels in testis, bone marrow, skeletal muscle, kidney, colon, thymus, small intestine and trachea.
INDUCTION: Up-regulated in skin homing T-cells of patients with atopic dermatitis (AD) and in activated circulating T-cells. Up- regulated in lesional biopsies of patients with allergic contact dermatitis (ACD).

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL31
Diseases sorted by gene-association score: dermatitis (36), allergic contact dermatitis (33), contact dermatitis (32), atopic dermatitis (26), epidermolysis bullosa pruriginosa (13), primary cutaneous amyloidosis (13), lichen amyloidosis (9), in situ pulmonary adenocarcinoma (7), uremic pruritus (6), asthma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.19 RPKM in Testis
Total median expression: 0.19 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.7049-0.157 Picture PostScript Text
3' UTR -100.20383-0.262 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15209 - Interleukin 31

ModBase Predicted Comparative 3D Structure on Q6EBC2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity

Biological Process:
GO:0002376 immune system process
GO:0010469 regulation of receptor activity
GO:0019221 cytokine-mediated signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  AY499343 - Homo sapiens interleukin 31 (IL31) mRNA, complete cds.
BC132998 - Homo sapiens interleukin 31, mRNA (cDNA clone MGC:164629 IMAGE:40147020), complete cds.
BC133000 - Homo sapiens interleukin 31, mRNA (cDNA clone MGC:164631 IMAGE:40147022), complete cds.
KJ896163 - Synthetic construct Homo sapiens clone ccsbBroadEn_05557 IL31 gene, encodes complete protein.
AB590927 - Synthetic construct DNA, clone: pFN21AE1650, Homo sapiens IL31 gene for interleukin 31, without stop codon, in Flexi system.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6EBC2 (Reactome details) participates in the following event(s):

R-HSA-6788467 IL-6-type cytokine receptor ligand interactions
R-HSA-6783589 Interleukin-6 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A2RUQ1, ENST00000377035.1, IL31_HUMAN, NM_001014336, Q6EBC2, uc318nim.1, uc318nim.2
UCSC ID: ENST00000377035.2_7
RefSeq Accession: NM_001014336.2
Protein: Q6EBC2 (aka IL31_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.