Human Gene IL33 (ENST00000682010.1_2) from GENCODE V47lift37
  Description: interleukin 33, transcript variant 1 (from RefSeq NM_033439.4)
Gencode Transcript: ENST00000682010.1_2
Gencode Gene: ENSG00000137033.12_4
Transcript (Including UTRs)
   Position: hg19 chr9:6,215,807-6,257,983 Size: 42,177 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr9:6,241,695-6,256,168 Size: 14,474 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:6,215,807-6,257,983)mRNA (may differ from genome)Protein (270 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL33_HUMAN
DESCRIPTION: RecName: Full=Interleukin-33; Short=IL-33; AltName: Full=Interleukin-1 family member 11; Short=IL-1F11; AltName: Full=Nuclear factor from high endothelial venules; Short=NF-HEV; Flags: Precursor;
FUNCTION: Cytokine that binds to and signals through IL1RL1/ST2 and its stimulation recruits MYD88, IRAK1, IRAK4, and TRAF6, followed by phosphorylation of MAPK3/ERK1 and/or MAPK1/ERK2, MAPK14, and MAPK8. Induces T-helper type 2-associated cytokines.
INTERACTION: Q01638:IL1RL1; NbExp=2; IntAct=EBI-724057, EBI-993762;
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed at high level in high endothelial venules found in tonsils, Peyer patches and mesenteric lymph nodes. Almost undetectable in placenta.
PTM: Proteolytically converted to a mature form by CASP1 in vitro and calpains in vivo.
SIMILARITY: Belongs to the IL-1 family. Highly divergent.
CAUTION: Was originally (PubMed:12819012) thought to one of the key factors that controls the specialized post-capillary high endothelial venules (HEV) phenotype found in organized secondary lymphoid tissue and to be nuclear localized.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL33
Diseases sorted by gene-association score: allergic conjunctivitis (9), idiopathic achalasia (8), kimura disease (7), allergic contact dermatitis (6), conjunctivitis (6), in situ pulmonary adenocarcinoma (5), eosinophilic gastritis (5), chronic conjunctivitis (4), bronchial disease (4), common cold (4), upper respiratory tract disease (4), respiratory system disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.4057-0.130 Picture PostScript Text
3' UTR -370.501815-0.204 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026145 - IL33

Pfam Domains:
PF15095 - Interleukin 33

SCOP Domains:
110221 - AbfB domain
50978 - WD40 repeat-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2KLL - NMR MuPIT


ModBase Predicted Comparative 3D Structure on O95760
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005515 protein binding

Biological Process:
GO:0002281 macrophage activation involved in immune response
GO:0002282 microglial cell activation involved in immune response
GO:0002686 negative regulation of leukocyte migration
GO:0002826 negative regulation of T-helper 1 type immune response
GO:0002830 positive regulation of type 2 immune response
GO:0006351 transcription, DNA-templated
GO:0010469 regulation of receptor activity
GO:0010628 positive regulation of gene expression
GO:0016579 protein deubiquitination
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032689 negative regulation of interferon-gamma production
GO:0032736 positive regulation of interleukin-13 production
GO:0032753 positive regulation of interleukin-4 production
GO:0032754 positive regulation of interleukin-5 production
GO:0032755 positive regulation of interleukin-6 production
GO:0038172 interleukin-33-mediated signaling pathway
GO:0042092 type 2 immune response
GO:0043032 positive regulation of macrophage activation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050729 positive regulation of inflammatory response
GO:0051024 positive regulation of immunoglobulin secretion
GO:0051025 negative regulation of immunoglobulin secretion
GO:0051607 defense response to virus
GO:0061518 microglial cell proliferation
GO:0090197 positive regulation of chemokine secretion
GO:0097191 extrinsic apoptotic signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0030133 transport vesicle
GO:0031410 cytoplasmic vesicle


-  Descriptions from all associated GenBank mRNAs
  AK295908 - Homo sapiens cDNA FLJ51972 complete cds, highly similar to Nuclear factor from high endothelial venules.
AK313414 - Homo sapiens cDNA, FLJ93952.
AK303943 - Homo sapiens cDNA FLJ50356 complete cds, highly similar to Nuclear factor from high endothelial venules.
BC047085 - Homo sapiens interleukin 33, mRNA (cDNA clone MGC:48555 IMAGE:5314040), complete cds.
HQ641439 - Homo sapiens interleukin 33 variant 2 (IL33) mRNA, complete cds, alternatively spliced.
AB024518 - Homo sapiens mRNA for DVS27-related protein, complete cds.
KX463463 - Homo sapiens isolate Ex3-4out-shortEx5 interleukin-33 (IL33) mRNA, complete cds, alternatively spliced.
KX463464 - Homo sapiens isolate Ex3out-shortEx5 interleukin-33 (IL33) mRNA, complete cds, alternatively spliced.
AB590743 - Synthetic construct DNA, clone: pFN21AE1765, Homo sapiens IL33 gene for interleukin 33, without stop codon, in Flexi system.
CR407619 - Homo sapiens full open reading frame cDNA clone RZPDo834B0111D for gene C9orf26, chromosome 9 open reading frame 26 (NF-HEV) complete cds, without stopcodon.
KJ895141 - Synthetic construct Homo sapiens clone ccsbBroadEn_04535 IL33 gene, encodes complete protein.
CU690370 - Synthetic construct Homo sapiens gateway clone IMAGE:100020811 5' read IL33 mRNA.
AY905581 - Homo sapiens interleukin-33 mRNA, complete cds.
AL080211 - Homo sapiens mRNA; cDNA DKFZp586H0523 (from clone DKFZp586H0523).
JD338282 - Sequence 319306 from Patent EP1572962.
JD328317 - Sequence 309341 from Patent EP1572962.
JD248917 - Sequence 229941 from Patent EP1572962.
JD494359 - Sequence 475383 from Patent EP1572962.
JD511226 - Sequence 492250 from Patent EP1572962.
JD168259 - Sequence 149283 from Patent EP1572962.
JD119640 - Sequence 100664 from Patent EP1572962.
JD554221 - Sequence 535245 from Patent EP1572962.
JD245194 - Sequence 226218 from Patent EP1572962.
JD354261 - Sequence 335285 from Patent EP1572962.
JD530014 - Sequence 511038 from Patent EP1572962.
JD263333 - Sequence 244357 from Patent EP1572962.
JD239601 - Sequence 220625 from Patent EP1572962.
MA886700 - WO 2019045075-A/1: A Therapeutic Agent for Endometriosis comprising IL-33 Antagonist.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O95760 (Reactome details) participates in the following event(s):

R-HSA-448629 IL33 binds IL1RL1
R-HSA-448603 IL33:IL1RL1 binds IL1RAP-1
R-HSA-6783177 USP21 deubiquitinates GATA3,IL33
R-HSA-9014843 Interleukin-33 signaling
R-HSA-446652 Interleukin-1 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-5689880 Ub-specific processing proteases
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-5688426 Deubiquitination
R-HSA-168256 Immune System
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B2R8L1, B4DJ35, B4E1Q9, C9orf26, D3DRI5, E7EAX4, IL1F11, IL33 , IL33_HUMAN, NFHEV, NM_033439, O95760, Q2YEJ5, uc330jhd.1, uc330jhd.2
UCSC ID: ENST00000682010.1_2
RefSeq Accession: NM_033439.4
Protein: O95760 (aka IL33_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.