Human Gene IL37 (ENST00000263326.8_7) from GENCODE V47lift37
  Description: interleukin 37, transcript variant 1 (from RefSeq NM_014439.4)
Gencode Transcript: ENST00000263326.8_7
Gencode Gene: ENSG00000125571.10_10
Transcript (Including UTRs)
   Position: hg19 chr2:113,668,742-113,676,459 Size: 7,718 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr2:113,670,590-113,676,386 Size: 5,797 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:113,668,742-113,676,459)mRNA (may differ from genome)Protein (218 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL37_HUMAN
DESCRIPTION: RecName: Full=Interleukin-37; AltName: Full=FIL1 zeta; AltName: Full=IL-1X; AltName: Full=Interleukin-1 family member 7; Short=IL-1F7; AltName: Full=Interleukin-1 homolog 4; Short=IL-1H; Short=IL-1H4; AltName: Full=Interleukin-1 zeta; Short=IL-1 zeta; AltName: Full=Interleukin-1-related protein; Short=IL-1RP1; AltName: Full=Interleukin-23; Short=IL-37; Flags: Precursor;
FUNCTION: Suppressor of innate inflammatory and immune responses involved in curbing excessive inflammation. This function requires SMAD3. Suppresses, or reduces, proinflammatory cytokine production, including IL1A and IL6, as well as CCL12, CSF1, CSF2, CXCL13, IL1B, IL23A and IL1RN, but spares anti-inflammatory cytokines. Inhibits dendritic cell activation.
SUBUNIT: Interacts with SMAD3. Binds IL18R1, but not to IL1R1, with lower affinity than IL18, and does not seem to act as a receptor antagonist for IL18.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Secreted. Note=Stimulation with IL1B leads to colocalization with SMAD3 mostly in perinuclear regions. Only the CASP1-cleaved mature form translocates into the nucleus upon LPS stimulation.
TISSUE SPECIFICITY: In general, low constitutive expression, if any, in healthy tissues; high expression in inflammatory counterparts, including in synovial tissues from individuals with active rheumatoid arthritis. Isoform A, isoform B and isoform C are expressed in testis, colon, placenta, lung and lymph node. Isoform D and isoform E were found only in testis and bone marrow. Whereas only isoform A is found in brain, only isoform B in kidney and only isoform C in heart.
INDUCTION: Highly induced by bacterial lipopolysaccharides (LPS) and TGFB1, more moderately by IFNG, IL18, IL1B, TNF and the dinucleotide CpG (at protein level). Constitutive expression in bone marrow macrophages is down-regulated in the presence of IL4 and CSF2. Induced by phorbol myristate acetate (PMA) in different cell lines.
PTM: Proteolytically converted to the mature form by CASP1.
SIMILARITY: Belongs to the IL-1 family.
WEB RESOURCE: Name=Wikipedia; Note=Interleukin-1 entry; URL="http://en.wikipedia.org/wiki/Interleukin_1";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il1f7/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.46 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 71.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.60134-0.333 Picture PostScript Text
3' UTR -0.9073-0.012 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008996 - Cytokine_IL1-like
IPR003297 - IL_rcpt_IL1RA
IPR000975 - Interleukin_1

Pfam Domains:
PF00340 - Interleukin-1 / 18

SCOP Domains:
50353 - Cytokine

ModBase Predicted Comparative 3D Structure on Q9NZH6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005149 interleukin-1 receptor binding

Biological Process:
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0010469 regulation of receptor activity
GO:0019221 cytokine-mediated signaling pathway
GO:0071345 cellular response to cytokine stimulus

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  HQ447646 - Synthetic construct Homo sapiens clone IMAGE:100070992; CCSB013111_02 interleukin 1 family, member 7 (zeta) (IL1F7) gene, encodes complete protein.
KJ898674 - Synthetic construct Homo sapiens clone ccsbBroadEn_08068 IL37 gene, encodes complete protein.
AF167368 - Homo sapiens IL-1X protein mRNA, complete cds.
AF200496 - Homo sapiens interleukin-1 homolog 4 mRNA, complete cds.
AF251118 - Homo sapiens interleukin-1-related protein long isoform a mRNA, complete cds; alternatively spliced.
JD501084 - Sequence 482108 from Patent EP1572962.
BC020637 - Homo sapiens interleukin 1 family, member 7 (zeta), mRNA (cDNA clone MGC:22276 IMAGE:4731213), complete cds.
AB451478 - Homo sapiens IL1F7 mRNA for interleukin 1 family member 7 isoform 2, partial cds, clone: FLJ80324SAAF.
AB590279 - Synthetic construct DNA, clone: pFN21AE1313, Homo sapiens IL1F7 gene for interleukin 1 family, member 7, without stop codon, in Flexi system.
AB451333 - Homo sapiens IL1F7 mRNA for interleukin 1 family member 7 isoform 2, complete cds, clone: FLJ80324SAAN.
CU676594 - Synthetic construct Homo sapiens gateway clone IMAGE:100022099 5' read IL1F7 mRNA.
AF251119 - Homo sapiens interleukin-1-related protein long isoform mRNA, complete cds; alternatively spliced.
AF251120 - Homo sapiens interleukin-1-related protein short isoform mRNA, complete cds; alternatively spliced.
AY071840 - Homo sapiens IL-1F7d (IL1F7) mRNA, complete cds, alternatively spliced.
AY071841 - Homo sapiens IL-1F7e (IL1F7) mRNA, complete cds, alternatively spliced.
DQ891388 - Synthetic construct clone IMAGE:100004018; FLH176437.01X; RZPDo839D04122D interleukin 1 family, member 7 (zeta) (IL1F7) gene, encodes complete protein.
AF201832 - Homo sapiens FIL1 zeta mRNA, complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NZH6 (Reactome details) participates in the following event(s):

R-HSA-9008692 IL37(?-218) binds SMAD3
R-HSA-9009910 IL37(?-218) binds p-S423,S425-SMAD3
R-HSA-8848335 IL37 binds IL18R1
R-HSA-9008587 IL37, IL37(?-218) binds IL18BP
R-HSA-9008694 IL37, IL37(?-218) translocates from cytosol to extracellular region
R-HSA-9008577 IL37:IL18R1 binds SIGIRR
R-HSA-9008059 Interleukin-37 signaling
R-HSA-446652 Interleukin-1 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B5BU97, ENST00000263326.1, ENST00000263326.2, ENST00000263326.3, ENST00000263326.4, ENST00000263326.5, ENST00000263326.6, ENST00000263326.7, FIL1Z, IL1F7, IL1H4, IL1RP1, IL37 , IL37_HUMAN, NM_014439, Q56AP9, Q8TD04, Q8TD05, Q9HBF2, Q9HBF3, Q9NZH6, Q9UHA6, uc317hiq.1, uc317hiq.2
UCSC ID: ENST00000263326.8_7
RefSeq Accession: NM_014439.4
Protein: Q9NZH6 (aka IL37_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.