Human Gene IL4 (ENST00000231449.7_4) from GENCODE V47lift37
  Description: interleukin 4, transcript variant 1 (from RefSeq NM_000589.4)
Gencode Transcript: ENST00000231449.7_4
Gencode Gene: ENSG00000113520.11_7
Transcript (Including UTRs)
   Position: hg19 chr5:132,009,681-132,018,370 Size: 8,690 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr5:132,009,743-132,018,279 Size: 8,537 Coding Exon Count: 4 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:132,009,681-132,018,370)mRNA (may differ from genome)Protein (153 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL4_HUMAN
DESCRIPTION: RecName: Full=Interleukin-4; Short=IL-4; AltName: Full=B-cell stimulatory factor 1; Short=BSF-1; AltName: Full=Binetrakin; AltName: Full=Lymphocyte stimulatory factor 1; AltName: Full=Pitrakinra; Flags: Precursor;
FUNCTION: Participates in at least several B-cell activation processes as well as of other cell types. It is a costimulator of DNA-synthesis. It induces the expression of class II MHC molecules on resting B-cells. It enhances both secretion and cell surface expression of IgE and IgG1. It also regulates the expression of the low affinity Fc receptor for IgE (CD23) on both lymphocytes and monocytes.
INTERACTION: P78552:IL13RA1; NbExp=3; IntAct=EBI-367025, EBI-1391535; P24394:IL4R; NbExp=5; IntAct=EBI-367025, EBI-367009;
SUBCELLULAR LOCATION: Secreted.
DISEASE: Genetic variations in IL4 may be a cause of susceptibility to ischemic stroke (ISCHSTR) [MIM:601367]; also known as cerebrovascular accident or cerebral infarction. A stroke is an acute neurologic event leading to death of neural tissue of the brain and resulting in loss of motor, sensory and/or cognitive function. Ischemic strokes, resulting from vascular occlusion, is considered to be a highly complex disease consisting of a group of heterogeneous disorders with multiple genetic and environmental risk factors.
SIMILARITY: Belongs to the IL-4/IL-13 family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il4/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL4
Diseases sorted by gene-association score: allergic bronchopulmonary aspergillosis (39), schistosomiasis (31), intrinsic asthma (28), vernal conjunctivitis (27), leishmaniasis (24), food allergy (22), blepharoconjunctivitis (22), conjunctival disease (22), allergic conjunctivitis (21), allergic asthma (21), allergic hypersensitivity disease (20), allergic rhinitis (19), visceral leishmaniasis (18), atopic keratoconjunctivitis (18), toxoplasmosis (18), orofacial granulomatosis (18), tetanus (18), milk allergy (17), paranasal sinus disease (16), cutaneous leishmaniasis (16), giant papillary conjunctivitis (16), papillary conjunctivitis (16), pulmonary eosinophilia (15), egg allergy (15), atopy (14), dermatitis (14), vernal keratoconjunctivitis (13), kimura disease (13), cough variant asthma (13), keratoconjunctivitis sicca (13), hyper ige syndrome (13), urinary schistosomiasis (13), tropical endomyocardial fibrosis (13), asthma (13), mycoplasmal pneumonia (13), endomyocardial fibrosis (12), pulmonary tuberculosis (12), atopic dermatitis (12), graves' disease (12), primary immunodeficiency disease (12), inflammatory bowel disease (11), jak3-deficient severe combined immunodeficiency (11), ocular cicatricial pemphigoid (11), conjunctivitis (11), rhinitis (11), brucellosis (10), paracoccidioidomycosis (10), severe combined immunodeficiency, x-linked (10), virus associated hemophagocytic syndrome (10), toxic oil syndrome (10), onchocerciasis (10), keratoconjunctivitis (10), folliculitis (10), latex allergy (9), persistent polyclonal b-cell lymphocytosis (9), trichinosis (9), beta-lactam allergy (9), eosinophilic meningitis (9), opisthorchiasis (9), somatoform disorder (9), acute graft versus host disease (9), angiostrongyliasis (9), respiratory system disease (9), contact dermatitis (9), tungiasis (8), penicillin allergy (8), alexithymia (8), cutaneous t cell lymphoma (8), crustacean allergy (8), skin disease (8), tonsillitis (8), natural killer cell leukemia (8), allergic contact dermatitis (8), rheumatic heart disease (8), aspergillosis (8), uveitis (8), bronchial disease (8), chromoblastomycosis (8), hashimoto thyroiditis (8), vulvovaginal candidiasis (8), proliferative glomerulonephritis (7), myasthenia gravis (7), neuritis (7), nasal cavity disease (7), nose disease (7), upper respiratory tract disease (7), sezary's disease (7), measles (7), chronic conjunctivitis (7), scleritis (7), bronchiolitis (7), autoimmune hemolytic anemia (7), aphthous stomatitis (7), common variable immunodeficiency (7), hyperlucent lung (7), rasmussen encephalitis (7), leukocyte disease (7), genital herpes (7), idiopathic interstitial pneumonia (7), poliomyelitis (7), microscopic colitis (7), dermatitis herpetiformis (6), aggressive periodontitis (6), spondyloarthropathy (6), hypersensitivity reaction type ii disease (6), toxic shock syndrome (6), trypanosomiasis (6), parasitic helminthiasis infectious disease (6), selective iga deficiency disease (6), multiple sclerosis, disease progression, modifier of (6), rubella (6), relapsing-remitting multiple sclerosis (6), gastroenteritis (6), lichen planus (6), hypersensitivity reaction disease (6), parasitic protozoa infectious disease (6), immunodeficiency, x-linked, with hyper-igm (6), eosinophilic gastritis (6), gingivitis (6), blepharitis (6), secondary progressive multiple sclerosis (6), smallpox (6), hypersplenism (5), retinitis pigmentosa 22 (5), intestinal schistosomiasis (5), baylisascariasis (5), diversion colitis (5), eales disease (5), enterobiasis (5), cercarial dermatitis (5), primary systemic mycosis (5), actinomycosis (5), immune system disease (5), buruli ulcer (5), omenn syndrome (5), mucocutaneous leishmaniasis (5), listeriosis (5), parasitic ichthyosporea infectious disease (5), rhinosporidiosis (5), coccidiosis (5), non-suppurative otitis media (5), chronic lymphocytic leukemia (5), gastrointestinal allergy (5), autoinflammation, lipodystrophy, and dermatosis syndrome (5), diabetes mellitus, insulin-dependent (5), chronic mucocutaneous candidiasis (4), severe combined immunodeficiency (4), primary bacterial infectious disease (4), extrinsic cardiomyopathy (4), lichen disease (4), congenital hypogammaglobulinemia (4), inflammatory bowel disease 4 (4), cryptococcosis (4), bardet-biedl syndrome 15 (4), mitral valve disease (4), apple allergy (4), opportunistic mycosis (4), granulomatous hepatitis (4), primary amebic meningoencephalitis (4), bare lymphocyte syndrome, type i (4), common cold (4), chronic tic disorder (4), colitis (3), periodontitis (3), papilloma (3), leprosy (3), interstitial lung disease (3), systemic lupus erythematosus (3), otitis media (3), rheumatoid arthritis (3), malaria (3), viral infectious disease (2), eye disease (2), renal cell carcinoma (2), aplastic anemia (2), bone inflammation disease (1), combined t cell and b cell immunodeficiency (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.35 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 2.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.3062-0.053 Picture PostScript Text
3' UTR -11.2091-0.123 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009079 - 4_helix_cytokine-like_core
IPR012351 - 4_helix_cytokine_core
IPR002354 - Interleukin-4
IPR018096 - Interleukin-4/-13_CS
IPR001325 - Interleukin-4/13

Pfam Domains:
PF00727 - Interleukin 4

SCOP Domains:
47266 - 4-helical cytokines

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1BBN - NMR MuPIT 1BCN - NMR MuPIT 1CYL - NMR MuPIT 1HIJ - X-ray MuPIT 1HIK - X-ray MuPIT 1HZI - X-ray MuPIT 1IAR - X-ray MuPIT 1ILL - Model 1ITE - Model 1ITI - NMR MuPIT 1ITL - NMR MuPIT 1ITM - NMR MuPIT 1RCB - X-ray MuPIT 2B8U - X-ray MuPIT 2B8X - X-ray MuPIT 2B8Y - X-ray MuPIT 2B8Z - X-ray MuPIT 2B90 - X-ray MuPIT 2B91 - X-ray MuPIT 2CYK - NMR MuPIT 2D48 - X-ray MuPIT 2INT - X-ray MuPIT 3BPL - X-ray MuPIT 3BPN - X-ray MuPIT 3QB7 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P05112
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005126 cytokine receptor binding
GO:0005136 interleukin-4 receptor binding
GO:0005515 protein binding
GO:0008083 growth factor activity

Biological Process:
GO:0006955 immune response
GO:0008203 cholesterol metabolic process
GO:0010469 regulation of receptor activity
GO:0010633 negative regulation of epithelial cell migration
GO:0019221 cytokine-mediated signaling pathway
GO:0030183 B cell differentiation
GO:0030890 positive regulation of B cell proliferation
GO:0032736 positive regulation of interleukin-13 production
GO:0035745 T-helper 2 cell cytokine production
GO:0042092 type 2 immune response
GO:0042102 positive regulation of T cell proliferation
GO:0042110 T cell activation
GO:0042113 B cell activation
GO:0042325 regulation of phosphorylation
GO:0043011 myeloid dendritic cell differentiation
GO:0043066 negative regulation of apoptotic process
GO:0045189 connective tissue growth factor biosynthetic process
GO:0045191 regulation of isotype switching
GO:0045348 positive regulation of MHC class II biosynthetic process
GO:0045582 positive regulation of T cell differentiation
GO:0045671 negative regulation of osteoclast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048295 positive regulation of isotype switching to IgE isotypes
GO:0048304 positive regulation of isotype switching to IgG isotypes
GO:0050776 regulation of immune response
GO:0097028 dendritic cell differentiation
GO:1903660 negative regulation of complement-dependent cytotoxicity
GO:2000352 negative regulation of endothelial cell apoptotic process

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  BC066277 - Homo sapiens interleukin 4, transcript variant 1, mRNA (cDNA clone MGC:79402 IMAGE:6971779), complete cds.
BC066278 - Homo sapiens interleukin 4, mRNA (cDNA clone IMAGE:6971781).
BC067514 - Homo sapiens interleukin 4, mRNA (cDNA clone MGC:79403 IMAGE:6971780), complete cds.
BC067515 - Homo sapiens interleukin 4, transcript variant 1, mRNA (cDNA clone MGC:79405 IMAGE:6971782), complete cds.
DD462529 - A METHOD FOR DESIGNING FLUORESCENCE RESONANT ENERGY TRANSFER PROBES.
BC070123 - Homo sapiens interleukin 4, mRNA (cDNA clone MGC:88101 IMAGE:30415895), complete cds.
M13982 - Human interleukin 4 (IL-4) mRNA, complete cds.
E02167 - cDNA encoding human TL-4.
JD307722 - Sequence 288746 from Patent EP1572962.
AM937235 - Homo sapiens mRNA for interleukin 4 (IL4 gene), clone 4m.
JD113966 - Sequence 94990 from Patent EP1572962.
CU688314 - Synthetic construct Homo sapiens gateway clone IMAGE:100022920 5' read IL4 mRNA.
KJ891455 - Synthetic construct Homo sapiens clone ccsbBroadEn_00849 IL4 gene, encodes complete protein.
AB102862 - Homo sapiens IL4 mRNA for interleukin4 nirs variant1, complete cds.
JX878389 - Homo sapiens interleukin 4 variant 2 (IL4) mRNA, complete cds, alternatively spliced.
X81851 - H. sapiens IL-4 gene splice variant.
AF043336 - Homo sapiens interleukin 4 delta 2 (IL4) mRNA, partial cds.
FU768462 - Short interference ribonucleic acids for treating allergic diseases.
EF173851 - Homo sapiens interleukin 4 mRNA, partial cds.
FU768460 - Short interference ribonucleic acids for treating allergic diseases.
FU768461 - Short interference ribonucleic acids for treating allergic diseases.
AX934309 - Sequence 8 from Patent WO03087815.
DD251153 - Compound Screening.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_cytokinePathway - Cytokine Network
h_dcPathway - Dendritic cells in regulating TH1 and TH2 Development
h_inflamPathway - Cytokines and Inflammatory Response
h_stemPathway - Regulation of hematopoiesis by cytokines
h_41bbPathway - The 4-1BB-dependent immune response
h_GATA3pathway - GATA3 participate in activating the Th2 cytokine genes expression
h_il4Pathway - IL 4 signaling pathway
h_il5Pathway - IL 5 Signaling Pathway
h_nktPathway - Selective expression of chemokine receptors during T-cell polarization
h_th1th2Pathway - Th1/Th2 Differentiation
h_tob1Pathway - Role of Tob in T-cell activation
h_asbcellPathway - Antigen Dependent B Cell Activation

Reactome (by CSHL, EBI, and GO)

Protein P05112 (Reactome details) participates in the following event(s):

R-HSA-6786101 IL4 binds IL4R:JAK2
R-HSA-6786070 IL4:IL4R:JAK2 binds IL13RA1:TYK2
R-HSA-6786092 IL4:IL4R:JAK2 binds IL2RG:JAK3
R-HSA-6785821 SOCS5,(SOCS1) bind IL4RA
R-HSA-6786124 STAT3,STAT6 bind p-Y-IL4R
R-HSA-6786095 JAK1 phosphorylates STAT3,STAT6
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000231449.1, ENST00000231449.2, ENST00000231449.3, ENST00000231449.4, ENST00000231449.5, ENST00000231449.6, IL4_HUMAN, NM_000589, P05112, Q14630, Q6NZ77, uc317duk.1, uc317duk.2
UCSC ID: ENST00000231449.7_4
RefSeq Accession: NM_000589.4
Protein: P05112 (aka IL4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.