Human Gene IL4R (ENST00000395762.7_9) from GENCODE V47lift37
  Description: interleukin 4 receptor, transcript variant 1 (from RefSeq NM_000418.4)
Gencode Transcript: ENST00000395762.7_9
Gencode Gene: ENSG00000077238.14_15
Transcript (Including UTRs)
   Position: hg19 chr16:27,325,295-27,376,099 Size: 50,805 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr16:27,351,525-27,375,151 Size: 23,627 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:27,325,295-27,376,099)mRNA (may differ from genome)Protein (825 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL4RA_HUMAN
DESCRIPTION: RecName: Full=Interleukin-4 receptor subunit alpha; Short=IL-4 receptor subunit alpha; Short=IL-4R subunit alpha; Short=IL-4R-alpha; Short=IL-4RA; AltName: CD_antigen=CD124; Contains: RecName: Full=Soluble interleukin-4 receptor subunit alpha; Short=Soluble IL-4 receptor subunit alpha; Short=Soluble IL-4R-alpha; Short=sIL4Ralpha/prot; AltName: Full=IL-4-binding protein; Short=IL4-BP; Flags: Precursor;
FUNCTION: Receptor for both interleukin 4 and interleukin 13. Couples to the JAK1/2/3-STAT6 pathway. The IL4 response is involved in promoting Th2 differentiation. The IL4/IL13 responses are involved in regulating IgE production and, chemokine and mucus production at sites of allergic inflammation. In certain cell types, can signal through activation of insulin receptor substrates, IRS1/IRS2.
FUNCTION: Soluble IL4R (sIL4R) inhibits IL4-mediated cell proliferation and IL5 up-regulation by T-cells.
SUBUNIT: The functional IL4 receptor is formed by initial binding of IL4 to IL4R. Subsequent recruitment to the complex of the common gamma chain, in immune cells, creates a type I receptor and, in non-immune cells, of IL13RA1 forms a type II receptor. IL4R can also interact with the IL13/IL13RA1 complex to form a similar type II receptor. Interacts with PIK3C3 (By similarity). Interacts with the SH2-containing phosphatases, PTPN6/SHIP1, PTPN11/SHIP2 and INPP5D/SHIP (By similarity). Interacts with JAK1 through a Box 1-containing region; inhibited by SOCS5. Interacts with SOCS5; inhibits IL4 signaling (By similarity).
INTERACTION: P05112:IL4; NbExp=5; IntAct=EBI-367009, EBI-367025;
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 2: Secreted.
TISSUE SPECIFICITY: Isoform 1 and isoform 2 are highly expressed in activated T-cells.
DOMAIN: The extracellular domain represents the IL4 binding protein (IL4BP).
DOMAIN: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell- surface receptor binding.
DOMAIN: The box 1 motif is required for JAK interaction and/or activation.
DOMAIN: Contains 1 copy of a cytoplasmic motif that is referred to as the immunoreceptor tyrosine-based inhibitor motif (ITIM). This motif is involved in modulation of cellular responses. The phosphorylated ITIM motif can bind the SH2 domain of several SH2- containing phosphatases.
PTM: On IL4 binding, phosphorylated on C-terminal tyrosine residues. Phosphorylation on any one of tyrosine residues, Tyr- 575, Tyr-603 or Tyr-631, is required for STAT6-induced gene induction.
PTM: The soluble form (sIL4R/IL4BP) can also be produced by proteolytic cleavage at the cell surface (shedding) by a metalloproteinase.
POLYMORPHISM: Allelic variants in IL4RA are associated with a susceptibility to atopy, an immunological condition that can lead to clinical symptoms such as allergic rhinitis, sinusitis, asthma and eczema.
POLYMORPHISM: Allelic variants in IL4RA are associated with cedar pollen sensitization. Individuals develop Japanese cedar pollinosis with increased exposure to cedar pollen. Japanese cedar pollinosis is a type I allergic disease with ocular and nasal symptoms that develop paroxysmally on contact with Japanese cedar pollen. These symptoms, which occur seasonally each year, are typical features of allergic rhinitis, such as sneezing, excessive nasal secretion, nasal congestion, and conjunctival itching.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 4 subfamily.
SIMILARITY: Contains 1 fibronectin type-III domain.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il4r/";
WEB RESOURCE: Name=SHMPD; Note=The Singapore human mutation and polymorphism database; URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=IL4R";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL4R
Diseases sorted by gene-association score: atopy* (608), hiv-1* (153), allergic rhinitis (32), sinusitis (26), beta-lactam allergy (24), penicillin allergy (22), rhinitis (21), asthma (16), allergic asthma (12), pollen allergy (11), bronchiolitis (8), hyper ige syndrome (7), allergic hypersensitivity disease (6), renal cell carcinoma (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 70.39 RPKM in Whole Blood
Total median expression: 851.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.10198-0.339 Picture PostScript Text
3' UTR -347.90948-0.367 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR003531 - Hempt_rcpt_S_F1_CS
IPR013783 - Ig-like_fold
IPR015319 - IL4Ra_N

Pfam Domains:
PF09238 - Interleukin-4 receptor alpha chain, N-terminal

SCOP Domains:
49265 - Fibronectin type III
63724 - Cytolysin/lectin

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1IAR - X-ray MuPIT 1IRS - NMR MuPIT 1ITE - Model 3BPL - X-ray MuPIT 3BPN - X-ray MuPIT 3BPO - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P24394
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004896 cytokine receptor activity
GO:0004913 interleukin-4 receptor activity
GO:0005057 signal transducer activity, downstream of receptor
GO:0005515 protein binding

Biological Process:
GO:0002376 immune system process
GO:0002532 production of molecular mediator involved in inflammatory response
GO:0002639 positive regulation of immunoglobulin production
GO:0006955 immune response
GO:0007165 signal transduction
GO:0016064 immunoglobulin mediated immune response
GO:0019221 cytokine-mediated signaling pathway
GO:0030728 ovulation
GO:0035771 interleukin-4-mediated signaling pathway
GO:0042127 regulation of cell proliferation
GO:0042832 defense response to protozoan
GO:0043032 positive regulation of macrophage activation
GO:0043306 positive regulation of mast cell degranulation
GO:0043627 response to estrogen
GO:0045626 negative regulation of T-helper 1 cell differentiation
GO:0045630 positive regulation of T-helper 2 cell differentiation
GO:0090197 positive regulation of chemokine secretion
GO:1901741 positive regulation of myoblast fusion
GO:1990834 response to odorant

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  AK314863 - Homo sapiens cDNA, FLJ95762, highly similar to Homo sapiens interleukin 4 receptor (IL4R), mRNA.
LF384296 - JP 2014500723-A/191799: Polycomb-Associated Non-Coding RNAs.
AK303255 - Homo sapiens cDNA FLJ58656 complete cds, highly similar to Interleukin-4 receptor alpha chain precursor.
BC110343 - Homo sapiens interleukin 4 receptor, mRNA (cDNA clone IMAGE:5762322), containing frame-shift errors.
AK223591 - Homo sapiens mRNA for interleukin 4 receptor alpha chain isoform a precursor variant, clone: FCC130H02.
X52425 - Human IL-4-R mRNA for the interleukin 4 receptor.
BC136365 - Homo sapiens interleukin 4 receptor, mRNA (cDNA clone MGC:167975 IMAGE:9020352), complete cds.
BC151131 - Homo sapiens interleukin 4 receptor, mRNA (cDNA clone MGC:184043 IMAGE:9057031), complete cds.
JD378158 - Sequence 359182 from Patent EP1572962.
JD238268 - Sequence 219292 from Patent EP1572962.
JD238267 - Sequence 219291 from Patent EP1572962.
JD525315 - Sequence 506339 from Patent EP1572962.
AB102798 - Homo sapiens IL4R mRNA for IL4R nirs variant 1, complete cds.
AB590835 - Synthetic construct DNA, clone: pFN21AE1899, Homo sapiens IL4R gene for interleukin 4 receptor, without stop codon, in Flexi system.
LF369844 - JP 2014500723-A/177347: Polycomb-Associated Non-Coding RNAs.
LF369846 - JP 2014500723-A/177349: Polycomb-Associated Non-Coding RNAs.
LF369847 - JP 2014500723-A/177350: Polycomb-Associated Non-Coding RNAs.
EF173858 - Homo sapiens interleukin 4 receptor alpha mRNA, partial cds.
LF369848 - JP 2014500723-A/177351: Polycomb-Associated Non-Coding RNAs.
LF369850 - JP 2014500723-A/177353: Polycomb-Associated Non-Coding RNAs.
LF369851 - JP 2014500723-A/177354: Polycomb-Associated Non-Coding RNAs.
LF369852 - JP 2014500723-A/177355: Polycomb-Associated Non-Coding RNAs.
LF369853 - JP 2014500723-A/177356: Polycomb-Associated Non-Coding RNAs.
JD177967 - Sequence 158991 from Patent EP1572962.
JD116251 - Sequence 97275 from Patent EP1572962.
JD322057 - Sequence 303081 from Patent EP1572962.
JD469035 - Sequence 450059 from Patent EP1572962.
JD469036 - Sequence 450060 from Patent EP1572962.
JD409871 - Sequence 390895 from Patent EP1572962.
JD377481 - Sequence 358505 from Patent EP1572962.
JD210494 - Sequence 191518 from Patent EP1572962.
JD134751 - Sequence 115775 from Patent EP1572962.
JD530013 - Sequence 511037 from Patent EP1572962.
JD162984 - Sequence 144008 from Patent EP1572962.
JD164231 - Sequence 145255 from Patent EP1572962.
LF369854 - JP 2014500723-A/177357: Polycomb-Associated Non-Coding RNAs.
JD062962 - Sequence 43986 from Patent EP1572962.
JD334409 - Sequence 315433 from Patent EP1572962.
LF369855 - JP 2014500723-A/177358: Polycomb-Associated Non-Coding RNAs.
JD137029 - Sequence 118053 from Patent EP1572962.
MA619873 - JP 2018138019-A/191799: Polycomb-Associated Non-Coding RNAs.
MA605421 - JP 2018138019-A/177347: Polycomb-Associated Non-Coding RNAs.
MA605423 - JP 2018138019-A/177349: Polycomb-Associated Non-Coding RNAs.
MA605424 - JP 2018138019-A/177350: Polycomb-Associated Non-Coding RNAs.
MA605425 - JP 2018138019-A/177351: Polycomb-Associated Non-Coding RNAs.
MA605427 - JP 2018138019-A/177353: Polycomb-Associated Non-Coding RNAs.
MA605428 - JP 2018138019-A/177354: Polycomb-Associated Non-Coding RNAs.
MA605429 - JP 2018138019-A/177355: Polycomb-Associated Non-Coding RNAs.
MA605430 - JP 2018138019-A/177356: Polycomb-Associated Non-Coding RNAs.
MA605431 - JP 2018138019-A/177357: Polycomb-Associated Non-Coding RNAs.
MA605432 - JP 2018138019-A/177358: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_il4Pathway - IL 4 signaling pathway
h_th1th2Pathway - Th1/Th2 Differentiation
h_nktPathway - Selective expression of chemokine receptors during T-cell polarization

Reactome (by CSHL, EBI, and GO)

Protein P24394 (Reactome details) participates in the following event(s):

R-HSA-6785898 IL4R binds JAK2
R-HSA-6786101 IL4 binds IL4R:JAK2
R-HSA-6786114 IL13:IL13RA:TYK2 binds IL4R:JAK2
R-HSA-6786070 IL4:IL4R:JAK2 binds IL13RA1:TYK2
R-HSA-6786092 IL4:IL4R:JAK2 binds IL2RG:JAK3
R-HSA-6785821 SOCS5,(SOCS1) bind IL4RA
R-HSA-6788571 STAT1,STAT3,STAT6 bind IL13:IL13R type II
R-HSA-6786124 STAT3,STAT6 bind p-Y-IL4R
R-HSA-6788582 STAT1,STAT3,STAT6 phosphorylation
R-HSA-6786095 JAK1 phosphorylates STAT3,STAT6
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: 582J2.1, B4E076, B9EKU8, ENST00000395762.1, ENST00000395762.2, ENST00000395762.3, ENST00000395762.4, ENST00000395762.5, ENST00000395762.6, H3BSY5, IL4RA, IL4RA_HUMAN, NM_000418, P24394, Q96P01, Q9H181, Q9H182, Q9H183, Q9H184, Q9H185, Q9H186, Q9H187, Q9H188, uc318xrs.1, uc318xrs.2
UCSC ID: ENST00000395762.7_9
RefSeq Accession: NM_000418.4
Protein: P24394 (aka IL4RA_HUMAN or IL4R_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.