Human Gene INTS5 (ENST00000330574.2_7) from GENCODE V47lift37
  Description: integrator complex subunit 5 (from RefSeq NM_030628.2)
Gencode Transcript: ENST00000330574.2_7
Gencode Gene: ENSG00000185085.2_9
Transcript (Including UTRs)
   Position: hg19 chr11:62,414,320-62,420,774 Size: 6,455 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr11:62,414,492-62,420,721 Size: 6,230 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:62,414,320-62,420,774)mRNA (may differ from genome)Protein (1019 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: INT5_HUMAN
DESCRIPTION: RecName: Full=Integrator complex subunit 5; Short=Int5;
FUNCTION: Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.
SUBUNIT: Belongs to the multiprotein complex Integrator, at least composed of INTS1, INTS2, INTS3, INTS4, INTS5, INTS6, INTS7, INTS8, INTS9/RC74, INTS10, CPSF3L/INTS11 and INTS12.
SUBCELLULAR LOCATION: Nucleus. Membrane; Multi-pass membrane protein (Potential).
SEQUENCE CAUTION: Sequence=AAH28025.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: INTS5
Diseases sorted by gene-association score: leigh syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.64 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 148.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -23.5053-0.443 Picture PostScript Text
3' UTR -51.70172-0.301 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF14837 - Integrator complex subunit 5 N-terminus
PF14838 - Integrator complex subunit 5 C-terminus

SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on Q6P9B9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0016180 snRNA processing
GO:0042795 snRNA transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031965 nuclear membrane
GO:0032039 integrator complex


-  Descriptions from all associated GenBank mRNAs
  AK074261 - Homo sapiens cDNA FLJ23681 fis, clone HEP09449.
BC060841 - Homo sapiens integrator complex subunit 5, mRNA (cDNA clone MGC:71747 IMAGE:30338563), complete cds.
BC028025 - Homo sapiens integrator complex subunit 5, mRNA (cDNA clone IMAGE:4179788), partial cds.
AB051485 - Homo sapiens mRNA for KIAA1698 protein, partial cds.
AK123587 - Homo sapiens cDNA FLJ41593 fis, clone CTONG2022835.
JD558665 - Sequence 539689 from Patent EP1572962.
JD468768 - Sequence 449792 from Patent EP1572962.
KJ894830 - Synthetic construct Homo sapiens clone ccsbBroadEn_04224 INTS5 gene, encodes complete protein.
CU687462 - Synthetic construct Homo sapiens gateway clone IMAGE:100023176 5' read INTS5 mRNA.
DQ600302 - Homo sapiens piRNA piR-38368, complete sequence.
JD129102 - Sequence 110126 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6P9B9 (Reactome details) participates in the following event(s):

R-HSA-6814885 CBCAP complex binds 7-methylguanosine cap of snRNA
R-HSA-6807505 RNA polymerase II transcribes snRNA genes
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000330574.1, INT5_HUMAN, KIAA1698, NM_030628, Q6P9B9, Q8N6W5, Q9C0G5, uc317szv.1, uc317szv.2
UCSC ID: ENST00000330574.2_7
RefSeq Accession: NM_030628.2
Protein: Q6P9B9 (aka INT5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.