Human Gene INVS (ENST00000262457.7_11) from GENCODE V47lift37
  Description: inversin, transcript variant 6 (from RefSeq NR_134606.2)
Gencode Transcript: ENST00000262457.7_11
Gencode Gene: ENSG00000119509.13_14
Transcript (Including UTRs)
   Position: hg19 chr9:102,861,525-103,064,457 Size: 202,933 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr9:102,866,804-103,062,956 Size: 196,153 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:102,861,525-103,064,457)mRNA (may differ from genome)Protein (1065 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: INVS_HUMAN
DESCRIPTION: RecName: Full=Inversin; AltName: Full=Inversion of embryo turning homolog; AltName: Full=Nephrocystin-2;
FUNCTION: Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled (DVL1) for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling. Involved in the organization of apical junctions in kidney cells together with NPHP1, NPHP4 and RPGRIP1L/NPHP8 (By similarity). Does not seem to be strictly required for ciliogenesis (By similarity).
SUBUNIT: Binds calmodulin via its IQ domains. Interacts with APC2. Interacts with alpha-, beta-, and gamma-catenin. Interacts with N- cadherin (CDH2). Interacts with microtubules (By similarity). Interacts with NPHP1. Interacts with DVL1, PRICKLE (PRICKLE1 or PRICKLE2) and Strabismus (VANGL1 or VANGL2). Interacts with NPHP3. Interacts with IQCB1; the interaction likely requires additional interactors.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cytoplasm, cytoskeleton (By similarity). Cytoplasm, cytoskeleton, spindle (By similarity). Membrane; Peripheral membrane protein (By similarity). Nucleus (By similarity). Cell projection, cilium. Note=Associates with several components of the cytoskeleton including ciliary, random and polarized microtubules. During mitosis, it is recruited to mitotic spindle. Frequently membrane- associated, membrane localization is dependent upon cell-cell contacts and is redistributed when cell adhesion is disrupted after incubation of the cell monolayer with low-calcium/EGTA medium.
TISSUE SPECIFICITY: Widely expressed. Strongly expressed in the primary cilia of renal tubular cells.
DOMAIN: The D-box 1 (destruction box 1) mediates the interaction with APC2, and may act as a recognition signal for degradation via the ubiquitin-proteasome pathway (By similarity).
PTM: May be ubiquitinated via its interaction with APC2 (By similarity).
DISEASE: Defects in INVS are the cause of nephronophthisis type 2 (NPHP2) [MIM:602088]; also known as infantile nephronophthisis. NPHP2 is an autosomal recessive disorder resulting in end-stage renal disease. It is characterized by early onset and rapid progression. Phenotypic manifestations include enlarged kidneys, chronic tubulo-interstitial nephritis, anemia, hyperkalemic metabolic acidosis. Some patients also display situs inversus. Pathologically, it differs from later-onset nephronophthisis by the absence of medullary cysts and thickened tubular basement membranes and by the presence of cortical microcysts.
SIMILARITY: Contains 16 ANK repeats.
SIMILARITY: Contains 2 IQ domains.
SEQUENCE CAUTION: Sequence=AAD02131.2; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH41665.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/INVS";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: INVS
Diseases sorted by gene-association score: nephronophthisis 2, infantile* (1330), nephronophthisis 16* (530), nephronophthisis* (234), senior-loken syndrome-1* (150), situs inversus (33), renal-hepatic-pancreatic dysplasia (13), cystic kidney disease (11), nephronophthisis 1, juvenile (10), interstitial nephritis (8), west nile encephalitis (7), cogan syndrome (6), lymphogranuloma venereum (6), visceral heterotaxy (6), bardet-biedl syndrome 13 (4), chronic kidney failure (3), bardet-biedl syndrome (3), retinitis pigmentosa (2), meckel syndrome 1 (1), joubert syndrome 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.56 RPKM in Ovary
Total median expression: 117.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -103.90198-0.525 Picture PostScript Text
3' UTR -358.401501-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR000048 - IQ_motif_EF-hand-BS

Pfam Domains:
PF00023 - Ankyrin repeat
PF00612 - IQ calmodulin-binding motif
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
52540 - P-loop containing nucleoside triphosphate hydrolases
48403 - Ankyrin repeat
54695 - POZ domain

ModBase Predicted Comparative 3D Structure on Q9Y283
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005516 calmodulin binding

Biological Process:
GO:0007275 multicellular organism development
GO:0016055 Wnt signaling pathway
GO:0090090 negative regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005929 cilium
GO:0016020 membrane
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  BC041665 - Homo sapiens, Similar to inversin, clone IMAGE:5497771, mRNA, partial cds.
AK312795 - Homo sapiens cDNA, FLJ93214.
AF039217 - Homo sapiens inv candidate homolog mRNA, complete cds.
BC063847 - Homo sapiens inversin, mRNA (cDNA clone IMAGE:6503936), partial cds.
AK304851 - Homo sapiens cDNA FLJ61581 complete cds, highly similar to Inversin.
BC072429 - Homo sapiens inversin, mRNA (cDNA clone IMAGE:6473229), containing frame-shift errors.
BC110864 - Homo sapiens cDNA clone IMAGE:5725529.
BC006370 - Homo sapiens inversin, mRNA (cDNA clone IMAGE:4138301), complete cds.
BC111761 - Homo sapiens inversin, transcript variant 1, mRNA (cDNA clone MGC:133080 IMAGE:40012263), complete cds.
BC112351 - Homo sapiens inversin, mRNA (cDNA clone MGC:133081 IMAGE:40012265), complete cds.
AF084367 - Homo sapiens inversin protein mRNA, complete cds.
KJ904725 - Synthetic construct Homo sapiens clone ccsbBroadEn_14119 INVS gene, encodes complete protein.
JD093267 - Sequence 74291 from Patent EP1572962.
JD494245 - Sequence 475269 from Patent EP1572962.
JD311594 - Sequence 292618 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A2A2Y2, ENST00000262457.1, ENST00000262457.2, ENST00000262457.3, ENST00000262457.4, ENST00000262457.5, ENST00000262457.6, INV, INVS_HUMAN, NPHP2, NR_134606, Q2NKL0, Q5W0T6, Q8IVX8, Q9BRB9, Q9Y283, Q9Y488, Q9Y498, uc317hao.1, uc317hao.2
UCSC ID: ENST00000262457.7_11
RefSeq Accession: NM_014425.5
Protein: Q9Y283 (aka INVS_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene INVS:
nephron-ov (Nephronophthisis-Related Ciliopathies)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.