Human Gene IPO13 (ENST00000372343.8_4) from GENCODE V47lift37
  Description: importin 13 (from RefSeq NM_014652.4)
Gencode Transcript: ENST00000372343.8_4
Gencode Gene: ENSG00000117408.11_7
Transcript (Including UTRs)
   Position: hg19 chr1:44,412,622-44,433,694 Size: 21,073 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg19 chr1:44,413,273-44,433,354 Size: 20,082 Coding Exon Count: 20 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:44,412,622-44,433,694)mRNA (may differ from genome)Protein (963 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: IPO13_HUMAN
DESCRIPTION: RecName: Full=Importin-13; Short=Imp13; AltName: Full=Karyopherin-13; Short=Kap13; AltName: Full=Ran-binding protein 13; Short=RanBP13;
FUNCTION: Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran- dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of UBC9, the RBM8A/MAGOH complex, PAX6 and probably other members of the paired homeobox family. Also mediates nuclear export of eIF-1A, and the cytoplasmic release of eIF-1A is triggered by the loading of import substrates onto IPO13.
SUBUNIT: Interacts with UBC9, RAN, RBM8A, eIF-1A and PAX6.
INTERACTION: Q15699:ALX1; NbExp=2; IntAct=EBI-747310, EBI-750671;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Expressed in fetal brain, heart, intestine and kidney.
SIMILARITY: Belongs to the importin beta family.
SIMILARITY: Contains 20 HEAT repeats.
SIMILARITY: Contains 1 importin N-terminal domain.
SEQUENCE CAUTION: Sequence=BAA34444.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAB14575.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IPO13
Diseases sorted by gene-association score: mitral valve insufficiency (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.74 RPKM in Testis
Total median expression: 683.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -292.90651-0.450 Picture PostScript Text
3' UTR -122.10340-0.359 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR013598 - Exportin-1/Importin-b-like
IPR001494 - Importin-beta_N

Pfam Domains:
PF03810 - Importin-beta N-terminal domain
PF08389 - Exportin 1-like protein
PF18773 - Importin 13 repeat
PF18786 - Importin 13 repeat
PF18806 - Importin 13 repeat

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2X19 - X-ray 2XWU - X-ray


ModBase Predicted Comparative 3D Structure on O94829
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008139 nuclear localization sequence binding
GO:0008536 Ran GTPase binding
GO:0008565 protein transporter activity

Biological Process:
GO:0006606 protein import into nucleus
GO:0006886 intracellular protein transport
GO:0015031 protein transport

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0031965 nuclear membrane


-  Descriptions from all associated GenBank mRNAs
  AB018267 - Homo sapiens KIAA0724 mRNA for KIAA0724 protein.
BC008194 - Homo sapiens importin 13, mRNA (cDNA clone MGC:5113 IMAGE:2985721), complete cds.
AK290173 - Homo sapiens cDNA FLJ77274 complete cds, highly similar to Homo sapiens importin 13 (IPO13), mRNA.
JF432433 - Synthetic construct Homo sapiens clone IMAGE:100073641 importin 13 (IPO13) gene, encodes complete protein.
AL117501 - Homo sapiens mRNA; cDNA DKFZp434D0635 (from clone DKFZp434D0635).
AK023441 - Homo sapiens cDNA FLJ13379 fis, clone PLACE1000987, highly similar to Rattus norvegicus late gestation lung 2 protein (Lgl2) mRNA.
AK091565 - Homo sapiens cDNA FLJ34246 fis, clone FCBBF4000061, highly similar to Importin-13.
AX747063 - Sequence 588 from Patent EP1308459.
JD515708 - Sequence 496732 from Patent EP1572962.
JD247644 - Sequence 228668 from Patent EP1572962.
JD544117 - Sequence 525141 from Patent EP1572962.
JD484901 - Sequence 465925 from Patent EP1572962.
JD217828 - Sequence 198852 from Patent EP1572962.
JD126185 - Sequence 107209 from Patent EP1572962.
BC002608 - Homo sapiens importin 13, mRNA (cDNA clone IMAGE:3161848), partial cds.
JD442361 - Sequence 423385 from Patent EP1572962.
JD065236 - Sequence 46260 from Patent EP1572962.
JD211461 - Sequence 192485 from Patent EP1572962.
JD253298 - Sequence 234322 from Patent EP1572962.
JD476965 - Sequence 457989 from Patent EP1572962.
JD126892 - Sequence 107916 from Patent EP1572962.
JD097248 - Sequence 78272 from Patent EP1572962.
JD086010 - Sequence 67034 from Patent EP1572962.
JD464463 - Sequence 445487 from Patent EP1572962.
JD402160 - Sequence 383184 from Patent EP1572962.
JD546025 - Sequence 527049 from Patent EP1572962.
JD397355 - Sequence 378379 from Patent EP1572962.
JD477082 - Sequence 458106 from Patent EP1572962.
JD389415 - Sequence 370439 from Patent EP1572962.
JD519830 - Sequence 500854 from Patent EP1572962.
JD186983 - Sequence 168007 from Patent EP1572962.
JD381117 - Sequence 362141 from Patent EP1572962.
JD438047 - Sequence 419071 from Patent EP1572962.
JD360837 - Sequence 341861 from Patent EP1572962.
AB383967 - Synthetic construct DNA, clone: pF1KSDA0724, Homo sapiens IPO13 gene for importin-13, complete cds, without stop codon, in Flexi system.
AF267987 - Homo sapiens Ran binding protein 13 (RANBP13) mRNA, complete cds.
JD085923 - Sequence 66947 from Patent EP1572962.
JD455942 - Sequence 436966 from Patent EP1572962.
JD111325 - Sequence 92349 from Patent EP1572962.
JD157726 - Sequence 138750 from Patent EP1572962.
JD539833 - Sequence 520857 from Patent EP1572962.
JD470590 - Sequence 451614 from Patent EP1572962.
JD126739 - Sequence 107763 from Patent EP1572962.
JD247606 - Sequence 228630 from Patent EP1572962.
JD273201 - Sequence 254225 from Patent EP1572962.
JD062675 - Sequence 43699 from Patent EP1572962.
JD044616 - Sequence 25640 from Patent EP1572962.
JD432091 - Sequence 413115 from Patent EP1572962.
JD336333 - Sequence 317357 from Patent EP1572962.
JD137504 - Sequence 118528 from Patent EP1572962.
JD313550 - Sequence 294574 from Patent EP1572962.
JD092972 - Sequence 73996 from Patent EP1572962.
JD547539 - Sequence 528563 from Patent EP1572962.
JD403418 - Sequence 384442 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DPY4, ENST00000372343.1, ENST00000372343.2, ENST00000372343.3, ENST00000372343.4, ENST00000372343.5, ENST00000372343.6, ENST00000372343.7, IPO13_HUMAN, KIAA0724, NM_014652, O94829, Q5T4X3, Q7LC04, Q96HS3, Q9H8N3, Q9UFR1, RANBP13, uc318jvl.1, uc318jvl.2
UCSC ID: ENST00000372343.8_4
RefSeq Accession: NM_014652.4
Protein: O94829 (aka IPO13_HUMAN or IP13_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.