Human Gene IPO7 (ENST00000379719.8_4) from GENCODE V47lift37
  Description: importin 7 (from RefSeq NM_006391.3)
Gencode Transcript: ENST00000379719.8_4
Gencode Gene: ENSG00000205339.10_7
Transcript (Including UTRs)
   Position: hg19 chr11:9,406,199-9,469,674 Size: 63,476 Total Exon Count: 25 Strand: +
Coding Region
   Position: hg19 chr11:9,406,311-9,466,741 Size: 60,431 Coding Exon Count: 25 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:9,406,199-9,469,674)mRNA (may differ from genome)Protein (1038 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: IPO7_HUMAN
DESCRIPTION: RecName: Full=Importin-7; Short=Imp7; AltName: Full=Ran-binding protein 7; Short=RanBP7;
FUNCTION: Functions in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with KPNB1 mediates the nuclear import of H1 histone and the Ran-binding site of IPO7 is not required but synergizes with that of KPNB1 in importin/substrate complex dissociation. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In vitro, mediates the nuclear import of HIV-1 reverse transcription complex (RTC) integrase. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
SUBUNIT: Interacts with H2A, H2B, H3 and H4 histones (By similarity). Forms a heterodimer with KPNB1. Interacts with KPNB1, SNUPN, XPO1, RPL23A, RPS7, RPL5 and HIV-1 reverse transcription complex integrase. Binds directly to nuclear pore complexes (By similarity). Interacts with H2A, H2B, H3 and H4 histones. Binds to HIV-1 Rev.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
SIMILARITY: Belongs to the importin beta family.
SIMILARITY: Contains 1 importin N-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IPO7
Diseases sorted by gene-association score: hiv-1 (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.74 RPKM in Muscle - Skeletal
Total median expression: 897.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.60112-0.398 Picture PostScript Text
3' UTR -663.102933-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR013713 - Exportin/Importin_Cse1-like
IPR001494 - Importin-beta_N

Pfam Domains:
PF03810 - Importin-beta N-terminal domain
PF08506 - Cse1

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
159612 - TBP-interacting protein-like

ModBase Predicted Comparative 3D Structure on O95373
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0005515 protein binding
GO:0008536 Ran GTPase binding
GO:0008565 protein transporter activity
GO:0030695 GTPase regulator activity
GO:0042393 histone binding
GO:0046332 SMAD binding

Biological Process:
GO:0006606 protein import into nucleus
GO:0006886 intracellular protein transport
GO:0007165 signal transduction
GO:0015031 protein transport
GO:0016032 viral process
GO:0045087 innate immune response
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity

Cellular Component:
GO:0005634 nucleus
GO:0005643 nuclear pore
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AK312885 - Homo sapiens cDNA, FLJ93329, Homo sapiens importin 7 (IPO7), mRNA.
AF098799 - Homo sapiens RanBP7/importin 7 mRNA, complete cds.
BC114929 - Homo sapiens importin 7, mRNA (cDNA clone MGC:138673 IMAGE:40036258), complete cds.
JD461658 - Sequence 442682 from Patent EP1572962.
JD234286 - Sequence 215310 from Patent EP1572962.
JD487440 - Sequence 468464 from Patent EP1572962.
AK074908 - Homo sapiens cDNA FLJ90427 fis, clone NT2RP3000481, highly similar to Importin-7.
BC026754 - Homo sapiens cDNA clone IMAGE:3857098, **** WARNING: chimeric clone ****.
AK027487 - Homo sapiens cDNA FLJ14581 fis, clone NT2RM4001382, highly similar to Importin-7.
AK027892 - Homo sapiens cDNA FLJ14986 fis, clone Y79AA1000784, highly similar to Importin-7.
AL137335 - Homo sapiens mRNA; cDNA DKFZp434A179 (from clone DKFZp434A179); partial cds.
BC044914 - Homo sapiens cDNA clone IMAGE:5286826.
JD179609 - Sequence 160633 from Patent EP1572962.
JD039285 - Sequence 20309 from Patent EP1572962.
JD207340 - Sequence 188364 from Patent EP1572962.
AL117596 - Homo sapiens mRNA; cDNA DKFZp564C2163 (from clone DKFZp564C2163).
JD419062 - Sequence 400086 from Patent EP1572962.
BC017787 - Homo sapiens cDNA clone IMAGE:4694729, **** WARNING: chimeric clone ****.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NNM5, B2R786, ENST00000379719.1, ENST00000379719.2, ENST00000379719.3, ENST00000379719.4, ENST00000379719.5, ENST00000379719.6, ENST00000379719.7, IPO7_HUMAN, NM_006391, O95373, Q1RMF7, Q9H177, Q9NTE3, RANBP7, uc318pdq.1, uc318pdq.2
UCSC ID: ENST00000379719.8_4
RefSeq Accession: NM_006391.3
Protein: O95373 (aka IPO7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.