Human Gene ITCH (ENST00000374864.10_8) from GENCODE V47lift37
  Description: itchy E3 ubiquitin protein ligase, transcript variant 2 (from RefSeq NM_031483.7)
Gencode Transcript: ENST00000374864.10_8
Gencode Gene: ENSG00000078747.17_11
Transcript (Including UTRs)
   Position: hg19 chr20:32,951,079-33,099,578 Size: 148,500 Total Exon Count: 25 Strand: +
Coding Region
   Position: hg19 chr20:32,981,618-33,095,599 Size: 113,982 Coding Exon Count: 23 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:32,951,079-33,099,578)mRNA (may differ from genome)Protein (862 aa)
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-  Comments and Description Text from UniProtKB
  ID: ITCH_HUMAN
DESCRIPTION: RecName: Full=E3 ubiquitin-protein ligase Itchy homolog; Short=Itch; EC=6.3.2.-; AltName: Full=Atrophin-1-interacting protein 4; Short=AIP4; AltName: Full=NFE2-associated polypeptide 1; Short=NAPP1;
FUNCTION: Acts as an E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It catalyzes 'Lys-29'-, 'Lys-48'- and 'Lys-63'-linked ubiquitin conjugation. It is involved in the control of inflammatory signaling pathways. Is an essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, TAX1BP1 and RNF11, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of the complex after TNF stimulation. Once the complex is formed, TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NFKB1. Ubiquitinates RIPK2 by 'Lys-63'-linked conjugation and influences NOD2-dependent signal transduction pathways. Regulates the transcriptional activity of several transcription factors, and probably plays an important role in the regulation of immune response. Ubiquitinates NFE2 by 'Lys-63' linkages and is implicated in the control of the development of hematopoietic lineages. Critical regulator of T-helper (TH2) cytokine development through its ability to induce JUNB ubiquitination and degradation (By similarity). Ubiquitinates SNX9. Ubiquitinates CXCR4 and HGS/HRS and regulates sorting of CXCR4 to the degradative pathway. It is involved in the negative regulation of MAVS-dependent cellular antiviral responses. Ubiquitinates MAVS through 'Lys-48'-linked conjugation resulting in MAVS proteasomal degradation. Involved in the regulation of apoptosis and reactive oxygen species levels through the ubiquitination and proteasomal degradation of TXNIP. Mediates the antiapoptotic activity of epidermal growth factor through the ubiquitination and proteasomal degradation of p15 BID. Targets DTX1 for lysosomal degradation and controls NOTCH1 degradation, in the absence of ligand, through 'Lys-29'-linked polyubiquitination.
ENZYME REGULATION: Activated by NDFIP1- and NDFIP2-binding (By similarity).
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Monomer (By similarity). Interacts (via its WW domains) with OCNL, NOTCH1 AND JUN. Interacts (via WW domain 2) with N4BP1; leading to inhibiting its E3 ubiquitin-protein ligase activity. Interacts with JUNB; the interaction promotes ITCH-mediated ubiquitination and degradation of JUNB. Interacts with NDFIP1 and NDFIP2; this interaction activates the E3 ubiquitin-protein ligase and may induce its recruitment to exosomes (By similarity). Interacts with ARHGEF7. Interacts with RNF11. Interacts (via the WW 1 domain) with NFE2 (via the PXY motif 1); the interaction promotes 'Lys-63'-linked ubiquitination of NFE2, retains it in the cytoplasm and prevents its transactivation activity. Interacts with FYN; the interaction phosphorylates ITCH on Tyr-420 decreasing binding of JUNB. Interacts (via WW domains) with CXCR4 (via C-terminus); the interaction depends on CXCR4 phosphorylation. Interacts (via WW domains) with PCBP2 within a complex containing ITCH, MAVS and PCBP2. Interacts (via WW domains) with TXNIP (via C-terminus). Interacts with p15 BID. Interacts with ERBB4, DTX1, SPG20, SNX9 and SNX18. Interacts (via its WW domains) with ATN1. Interacts with Epstein-Barr virus LMP2A. Interacts (via WW domains) with SGK3.
INTERACTION: P08151:GLI1; NbExp=4; IntAct=EBI-1564678, EBI-308084; Q9QZS3-2:Numb (xeno); NbExp=2; IntAct=EBI-1564678, EBI-3896014; Q9Y3C5:RNF11; NbExp=2; IntAct=EBI-1564678, EBI-396669;
SUBCELLULAR LOCATION: Cell membrane. Cytoplasm (By similarity). Nucleus. Note=Associates with endocytic vesicles. May be recruited to exosomes by NDFIP1.
TISSUE SPECIFICITY: Widely expressed.
PTM: On T-cell activation, phosphorylation by the JNK cascade on serine and threonine residues surrounding the PRR domain accelerates the ubiquitination and degradation of JUN and JUNB. The increased ITCH catalytic activity due to phosphorylation by JNK1 may occur due to a conformational change disrupting the interaction between the PRR/WW motifs domain and the HECT domain and, thus exposing the HECT domain (By similarity). Phosphorylation by FYN reduces interaction with JUNB and negatively controls JUN ubiquitination and degradation.
PTM: Ubiquitinated; autopolyubiquitination with 'Lys-63' linkages which does not lead to protein degradation.
DISEASE: Defects in ITCH are the cause of syndromic multisystem autoimmune disease (SMAD) [MIM:613385]. SMAD is characterized by organomegaly, failure to thrive, developmental delay, dysmorphic features and autoimmune inflammatory cell infiltration of the lungs, liver and gut.
SIMILARITY: Contains 1 C2 domain.
SIMILARITY: Contains 1 HECT (E6AP-type E3 ubiquitin-protein ligase) domain.
SIMILARITY: Contains 4 WW domains.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: ITCH
Diseases sorted by gene-association score: autoimmune disease, multisystem, with facial dysmorphism* (1269), itch e3 ubiquitin ligase deficiency* (418), louping ill (10), split-hand/foot malformation 4 (5), troyer syndrome (5), rapp-hodgkin syndrome (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.61 RPKM in Testis
Total median expression: 462.42 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -71.90175-0.411 Picture PostScript Text
3' UTR -1054.703979-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000008 - C2_Ca-dep
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR018029 - C2_membr_targeting
IPR024928 - E3_ub_ligase_SMURF1
IPR000569 - HECT
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00168 - C2 domain
PF00397 - WW domain
PF00632 - HECT-domain (ubiquitin-transferase)

SCOP Domains:
46689 - Homeodomain-like
63829 - Calcium-dependent phosphotriesterase
101898 - NHL repeat
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
51045 - WW domain
54171 - DNA-binding domain
160582 - MbtH-like
56204 - Hect, E3 ligase catalytic domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DMV - NMR MuPIT 2KYK - NMR MuPIT 2NQ3 - X-ray MuPIT 2P4R - X-ray 2YSF - NMR MuPIT 3TUG - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q96J02
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016874 ligase activity
GO:0019787 ubiquitin-like protein transferase activity
GO:0043021 ribonucleoprotein complex binding
GO:0044389 ubiquitin-like protein ligase binding
GO:0045236 CXCR chemokine receptor binding
GO:0061630 ubiquitin protein ligase activity
GO:1990763 arrestin family protein binding

Biological Process:
GO:0000209 protein polyubiquitination
GO:0001558 regulation of cell growth
GO:0002376 immune system process
GO:0002669 positive regulation of T cell anergy
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0006915 apoptotic process
GO:0006954 inflammatory response
GO:0007219 Notch signaling pathway
GO:0016032 viral process
GO:0016567 protein ubiquitination
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0032480 negative regulation of type I interferon production
GO:0035519 protein K29-linked ubiquitination
GO:0043066 negative regulation of apoptotic process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045087 innate immune response
GO:0045732 positive regulation of protein catabolic process
GO:0046329 negative regulation of JNK cascade
GO:0046642 negative regulation of alpha-beta T cell proliferation
GO:0046718 viral entry into host cell
GO:0050687 negative regulation of defense response to virus
GO:0051607 defense response to virus
GO:0051865 protein autoubiquitination
GO:0070423 nucleotide-binding oligomerization domain containing signaling pathway
GO:0070534 protein K63-linked ubiquitination
GO:0070936 protein K48-linked ubiquitination
GO:0090085 regulation of protein deubiquitination
GO:1902036 regulation of hematopoietic stem cell differentiation
GO:2000646 positive regulation of receptor catabolic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005938 cell cortex
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0031410 cytoplasmic vesicle
GO:0031901 early endosome membrane
GO:0032991 macromolecular complex
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome
GO:0005769 early endosome


-  Descriptions from all associated GenBank mRNAs
  AK297809 - Homo sapiens cDNA FLJ54369 complete cds, highly similar to Itchy homolog E3 ubiquitin protein ligase (EC 6.3.2.-).
AK315212 - Homo sapiens cDNA, FLJ96205, Homo sapiens itchy homolog E3 ubiquitin protein ligase (mouse)(ITCH), mRNA.
AK304090 - Homo sapiens cDNA FLJ50951 complete cds, highly similar to Itchy homolog E3 ubiquitin protein ligase (EC6.3.2.-).
BC011571 - Homo sapiens itchy E3 ubiquitin protein ligase homolog (mouse), mRNA (cDNA clone MGC:20230 IMAGE:4560366), complete cds.
AB056663 - Homo sapiens mRNA for ubiquitin protein ligase Itch, complete cds.
AF095745 - Homo sapiens ubiquitin protein ligase ITCH mRNA, complete cds.
AB590560 - Synthetic construct DNA, clone: pFN21AE2101, Homo sapiens ITCH gene for itchy E3 ubiquitin protein ligase homolog, without stop codon, in Flexi system.
AF038564 - Homo sapiens atrophin-1 interacting protein 4 (AIP4) mRNA, partial cds.
AB209747 - Homo sapiens mRNA for itchy homolog E3 ubiquitin protein ligase variant protein.
JD541798 - Sequence 522822 from Patent EP1572962.
BC006848 - Homo sapiens itchy E3 ubiquitin protein ligase homolog (mouse), mRNA (cDNA clone IMAGE:3451168), partial cds.
JD377365 - Sequence 358389 from Patent EP1572962.
JD358853 - Sequence 339877 from Patent EP1572962.
JD227377 - Sequence 208401 from Patent EP1572962.
JD549940 - Sequence 530964 from Patent EP1572962.
JD165024 - Sequence 146048 from Patent EP1572962.
JD484293 - Sequence 465317 from Patent EP1572962.
JD257176 - Sequence 238200 from Patent EP1572962.
JD138809 - Sequence 119833 from Patent EP1572962.
JD166448 - Sequence 147472 from Patent EP1572962.
JD563481 - Sequence 544505 from Patent EP1572962.
JD508279 - Sequence 489303 from Patent EP1572962.
JD043146 - Sequence 24170 from Patent EP1572962.
JD117101 - Sequence 98125 from Patent EP1572962.
JD034960 - Sequence 15984 from Patent EP1572962.
JD483260 - Sequence 464284 from Patent EP1572962.
JD315444 - Sequence 296468 from Patent EP1572962.
JD299910 - Sequence 280934 from Patent EP1572962.
JD250656 - Sequence 231680 from Patent EP1572962.
JD345853 - Sequence 326877 from Patent EP1572962.
JD158439 - Sequence 139463 from Patent EP1572962.
JD201006 - Sequence 182030 from Patent EP1572962.
JD250551 - Sequence 231575 from Patent EP1572962.
JD190430 - Sequence 171454 from Patent EP1572962.
JD385833 - Sequence 366857 from Patent EP1572962.
JD088485 - Sequence 69509 from Patent EP1572962.
JD303808 - Sequence 284832 from Patent EP1572962.
JD305525 - Sequence 286549 from Patent EP1572962.
JD336313 - Sequence 317337 from Patent EP1572962.
JD242066 - Sequence 223090 from Patent EP1572962.
JD192478 - Sequence 173502 from Patent EP1572962.
JD392054 - Sequence 373078 from Patent EP1572962.
JD468411 - Sequence 449435 from Patent EP1572962.
JD206648 - Sequence 187672 from Patent EP1572962.
JD300739 - Sequence 281763 from Patent EP1572962.
JD564952 - Sequence 545976 from Patent EP1572962.
JD278634 - Sequence 259658 from Patent EP1572962.
JD436093 - Sequence 417117 from Patent EP1572962.
JD370934 - Sequence 351958 from Patent EP1572962.
JD342809 - Sequence 323833 from Patent EP1572962.
JD541403 - Sequence 522427 from Patent EP1572962.
JD515497 - Sequence 496521 from Patent EP1572962.
JD373939 - Sequence 354963 from Patent EP1572962.
JD266483 - Sequence 247507 from Patent EP1572962.
JD178659 - Sequence 159683 from Patent EP1572962.
JD206848 - Sequence 187872 from Patent EP1572962.
JD388451 - Sequence 369475 from Patent EP1572962.
JD155413 - Sequence 136437 from Patent EP1572962.
JD447479 - Sequence 428503 from Patent EP1572962.
JD520951 - Sequence 501975 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96J02 (Reactome details) participates in the following event(s):

R-HSA-990526 Recruitment of AIP4 and K48 ubiquitination of MAVS/IPS-1
R-HSA-1980125 ITCH binds DTX
R-HSA-1980128 NOTCH1 associates with negative regulators NUMB and ITCH
R-HSA-5610735 NUMB binds ITCH
R-HSA-1912357 ITCH ubiquitinates DTX
R-HSA-1912386 Ubiquitination of NOTCH1 by ITCH in the absence of ligand
R-HSA-5610737 NUMB:ITCH bind and ubiquitnate GLI1
R-HSA-5635861 NUMB:ITCH binds GLI1
R-HSA-1253300 ERBB4 binds WWP1/ITCH ubiquitin ligases
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-8956684 ITCH polyubiquitinates TP73
R-HSA-5635864 NUMB:ITCH ubiquitinates GLI1
R-HSA-688137 RIP2 is K63 polyubiquitinated
R-HSA-1253282 ERBB4 ubiquitination by WWP1/ITCH
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-936440 Negative regulators of DDX58/IFIH1 signaling
R-HSA-2122948 Activated NOTCH1 Transmits Signal to the Nucleus
R-HSA-5610780 Degradation of GLI1 by the proteasome
R-HSA-5632684 Hedgehog 'on' state
R-HSA-8939236 RUNX1 regulates transcription of genes involved in differentiation of HSCs
R-HSA-1253288 Downregulation of ERBB4 signaling
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-168928 DDX58/IFIH1-mediated induction of interferon-alpha/beta
R-HSA-1980143 Signaling by NOTCH1
R-HSA-5610787 Hedgehog 'off' state
R-HSA-5358351 Signaling by Hedgehog
R-HSA-8878171 Transcriptional regulation by RUNX1
R-HSA-168638 NOD1/2 Signaling Pathway
R-HSA-1236394 Signaling by ERBB4
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-168249 Innate Immune System
R-HSA-157118 Signaling by NOTCH
R-HSA-162582 Signal Transduction
R-HSA-212436 Generic Transcription Pathway
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A6NEW4, B4E234, E1P5P3, ENST00000374864.1, ENST00000374864.2, ENST00000374864.3, ENST00000374864.4, ENST00000374864.5, ENST00000374864.6, ENST00000374864.7, ENST00000374864.8, ENST00000374864.9, F5H217, ITCH_HUMAN, NM_031483, O43584, Q5QP37, Q5TEL0, Q96F66, Q96J02, Q9BY75, Q9H451, Q9H4U5, uc318lwu.1, uc318lwu.2
UCSC ID: ENST00000374864.10_8
RefSeq Accession: NM_031483.7
Protein: Q96J02 (aka ITCH_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.