Human Gene ITGAD (ENST00000389202.3_4) from GENCODE V47lift37
  Description: integrin subunit alpha D, transcript variant 2 (from RefSeq NM_005353.3)
Gencode Transcript: ENST00000389202.3_4
Gencode Gene: ENSG00000156886.12_8
Transcript (Including UTRs)
   Position: hg19 chr16:31,404,656-31,437,826 Size: 33,171 Total Exon Count: 30 Strand: +
Coding Region
   Position: hg19 chr16:31,404,682-31,437,449 Size: 32,768 Coding Exon Count: 30 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:31,404,656-31,437,826)mRNA (may differ from genome)Protein (1161 aa)
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-  Comments and Description Text from UniProtKB
  ID: ITAD_HUMAN
DESCRIPTION: RecName: Full=Integrin alpha-D; AltName: Full=ADB2; AltName: Full=CD11 antigen-like family member D; AltName: Full=Leukointegrin alpha D; AltName: CD_antigen=CD11d; Flags: Precursor;
FUNCTION: Integrin alpha-D/beta-2 is a receptor for ICAM3 and VCAM1. May play a role in the atherosclerotic process such as clearing lipoproteins from plaques and in phagocytosis of blood- borne pathogens, particulate matter, and senescent erythrocytes from the blood.
SUBUNIT: Heterodimer of an alpha and a beta subunit. Alpha-D associates with beta-2.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Expressed moderately on myelomonocytic cell lines and subsets of peripheral blood leukocytes and strongly on tissue-specialized cells, including macrophages foam cells within atherosclerotic plaques, and on splenic red pulp macrophages.
DOMAIN: The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavage.
SIMILARITY: Belongs to the integrin alpha chain family.
SIMILARITY: Contains 7 FG-GAP repeats.
SIMILARITY: Contains 1 VWFA domain.
SEQUENCE CAUTION: Sequence=AAB60634.1; Type=Miscellaneous discrepancy;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ITGAD
Diseases sorted by gene-association score: chronic monocytic leukemia (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.07 RPKM in Spleen
Total median expression: 12.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.1026-0.119 Picture PostScript Text
3' UTR -92.20377-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013519 - Int_alpha_beta-p
IPR000413 - Integrin_alpha
IPR013649 - Integrin_alpha-2
IPR018184 - Integrin_alpha_C_CS
IPR002035 - VWF_A

Pfam Domains:
PF00092 - von Willebrand factor type A domain
PF00357 - Integrin alpha cytoplasmic region
PF01839 - FG-GAP repeat
PF08441 - Integrin alpha
PF13519 - von Willebrand factor type A domain

SCOP Domains:
69179 - Integrin domains
69318 - Integrin alpha N-terminal domain
53300 - vWA-like

ModBase Predicted Comparative 3D Structure on Q13349
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0006955 immune response
GO:0007155 cell adhesion
GO:0007229 integrin-mediated signaling pathway
GO:0030198 extracellular matrix organization
GO:0034113 heterotypic cell-cell adhesion

Cellular Component:
GO:0005886 plasma membrane
GO:0008305 integrin complex
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK097160 - Homo sapiens cDNA FLJ39841 fis, clone SPLEN2014210, moderately similar to Rattus norvegicus alpha D integrin mRNA.
AB208945 - Homo sapiens mRNA for PREDICTED: integrin, alpha D variant protein.
AK301028 - Homo sapiens cDNA FLJ51333 complete cds, highly similar to Integrin alpha-D precursor.
BC156095 - Synthetic construct Homo sapiens clone IMAGE:100062383, MGC:190493 integrin, alpha D (ITGAD) mRNA, encodes complete protein.
AB384792 - Synthetic construct DNA, clone: pF1KB3338, Homo sapiens ITGAD gene for integrin alpha-D precursor, complete cds, without stop codon, in Flexi system.
U37028 - Human leukointegrin alpha d chain mRNA, partial cds.
JD052976 - Sequence 34000 from Patent EP1572962.
JD377101 - Sequence 358125 from Patent EP1572962.
JD287313 - Sequence 268337 from Patent EP1572962.
JD419628 - Sequence 400652 from Patent EP1572962.
JD226796 - Sequence 207820 from Patent EP1572962.
JD536467 - Sequence 517491 from Patent EP1572962.
JD459598 - Sequence 440622 from Patent EP1572962.
JD290126 - Sequence 271150 from Patent EP1572962.
JD104731 - Sequence 85755 from Patent EP1572962.
JD438455 - Sequence 419479 from Patent EP1572962.
JD051853 - Sequence 32877 from Patent EP1572962.
JD092779 - Sequence 73803 from Patent EP1572962.
JD294583 - Sequence 275607 from Patent EP1572962.
JD334712 - Sequence 315736 from Patent EP1572962.
JD371482 - Sequence 352506 from Patent EP1572962.
JD418414 - Sequence 399438 from Patent EP1572962.
JD124573 - Sequence 105597 from Patent EP1572962.
JD339191 - Sequence 320215 from Patent EP1572962.
JD203365 - Sequence 184389 from Patent EP1572962.
JD218911 - Sequence 199935 from Patent EP1572962.
JD531813 - Sequence 512837 from Patent EP1572962.
JD385209 - Sequence 366233 from Patent EP1572962.
JD527596 - Sequence 508620 from Patent EP1572962.
JD374057 - Sequence 355081 from Patent EP1572962.
JD178789 - Sequence 159813 from Patent EP1572962.
JD283243 - Sequence 264267 from Patent EP1572962.
JD172984 - Sequence 154008 from Patent EP1572962.
JD264459 - Sequence 245483 from Patent EP1572962.
JD054018 - Sequence 35042 from Patent EP1572962.
JD204670 - Sequence 185694 from Patent EP1572962.
JD068195 - Sequence 49219 from Patent EP1572962.
JD511396 - Sequence 492420 from Patent EP1572962.
JD165035 - Sequence 146059 from Patent EP1572962.
JD165036 - Sequence 146060 from Patent EP1572962.
JD057940 - Sequence 38964 from Patent EP1572962.
JD204109 - Sequence 185133 from Patent EP1572962.
JD088113 - Sequence 69137 from Patent EP1572962.
JD056850 - Sequence 37874 from Patent EP1572962.
JD474888 - Sequence 455912 from Patent EP1572962.
JD218141 - Sequence 199165 from Patent EP1572962.
JD211003 - Sequence 192027 from Patent EP1572962.
JD540745 - Sequence 521769 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13349 (Reactome details) participates in the following event(s):

R-HSA-216069 Interaction of integrin alphaDbeta2 with fibrin
R-HSA-216083 Integrin cell surface interactions
R-HSA-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000389202.1, ENST00000389202.2, ITAD_HUMAN, NM_005353, Q13349, Q15575, Q15576, uc318tdo.1, uc318tdo.2
UCSC ID: ENST00000389202.3_4
RefSeq Accession: NM_005353.3
Protein: Q13349 (aka ITAD_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.