Human Gene ITGAV (ENST00000261023.8_7) from GENCODE V47lift37
Description: integrin subunit alpha V, transcript variant 1 (from RefSeq NM_002210.5)
Gencode Transcript: ENST00000261023.8_7
Gencode Gene: ENSG00000138448.13_14
Transcript (Including UTRs)
Position: hg19 chr2:187,454,783-187,545,628 Size: 90,846 Total Exon Count: 30 Strand: +
Coding Region
Position: hg19 chr2:187,455,066-187,542,019 Size: 86,954 Coding Exon Count: 30
Data last updated at UCSC: 2024-08-22 23:36:26
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: ITAV_HUMAN
DESCRIPTION: RecName: Full=Integrin alpha-V; AltName: Full=Vitronectin receptor subunit alpha; AltName: CD_antigen=CD51; Contains: RecName: Full=Integrin alpha-V heavy chain; Contains: RecName: Full=Integrin alpha-V light chain; Flags: Precursor;
FUNCTION: The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen, laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin and vWF. They recognize the sequence R-G-D in a wide array of ligands. In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions.SUBUNIT: Heterodimer of an alpha and a beta subunit. The alpha subunit is composed of an heavy and a light chain linked by a disulfide bond. Alpha-V associates with either beta-1, beta-3, beta-5, beta-6 or beta-8 subunit. Interacts with HIV-1 Tat. Alpha- V/beta-6 binds to foot-and-mouth disease virus (FMDV) VP1 protein and acts as a receptor for this virus (By similarity). Alpha- V/beta-6 binds to coxsackievirus A9 and coxsackievirus B1 capsid proteins and acts as a receptor for these viruses. Interacts with RAB25.INTERACTION: P05106:ITGB3; NbExp=9; IntAct=EBI-298282, EBI-702847; P18084:ITGB5; NbExp=2; IntAct=EBI-298282, EBI-1223434;SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.SIMILARITY: Belongs to the integrin alpha chain family.SIMILARITY: Contains 7 FG-GAP repeats.SEQUENCE CAUTION: Sequence=BAD93131.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Primer design for this transcript
MalaCards Disease Associations
MalaCards Gene Search: ITGAV
Diseases sorted by gene-association score: west nile virus (16), pharyngoconjunctival fever (11), fibrolamellar carcinoma (9), cerebral hypoxia (9), priapism (9), insulin-like growth factor i (9), colon carcinoma in situ (7), retinitis pigmentosa 42 (7), mouth disease (6), herpes simplex (6), hiv-1 (2), colorectal cancer (1)
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR013517 - FG-GAP
IPR013519 - Int_alpha_beta-p
IPR000413 - Integrin_alpha
IPR013649 - Integrin_alpha-2
IPR018184 - Integrin_alpha_C_CS
Pfam Domains: PF00357 - Integrin alpha cytoplasmic region
PF01839 - FG-GAP repeat
PF08441 - Integrin alpha
SCOP Domains: 69179 - Integrin domains
69318 - Integrin alpha N-terminal domain
Protein Data Bank (PDB) 3-D Structure
ModBase Predicted Comparative 3D Structure on P06756
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF205741 - JP 2014500723-A/13244: Polycomb-Associated Non-Coding RNAs.LF213852 - JP 2014500723-A/21355: Polycomb-Associated Non-Coding RNAs.AK309711 - Homo sapiens cDNA, FLJ99752.AK302550 - Homo sapiens cDNA FLJ57822 complete cds, highly similar to Integrin alpha-V precursor.AB209894 - Homo sapiens mRNA for integrin alpha-V precursor variant protein.BC126231 - Homo sapiens integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51), mRNA (cDNA clone MGC:161509 IMAGE:8991947), complete cds.BC136442 - Homo sapiens integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51), mRNA (cDNA clone MGC:168054 IMAGE:9020431), complete cds.BC144100 - Homo sapiens integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51), mRNA (cDNA clone MGC:177637 IMAGE:9052620), complete cds.EF560727 - Homo sapiens clone DKFZp686A08142 ITGAV protein (ITGAV) mRNA, complete cds.M14648 - Human cell adhesion protein (vitronectin) receptor alpha subunit mRNA, complete cds.AB527165 - Synthetic construct DNA, clone: pF1KB5610, Homo sapiens ITGAV gene for integrin, alpha V, without stop codon, in Flexi system.AK302990 - Homo sapiens cDNA FLJ51414 complete cds, highly similar to Integrin alpha-V precursor.LF347687 - JP 2014500723-A/155190: Polycomb-Associated Non-Coding RNAs.LF347688 - JP 2014500723-A/155191: Polycomb-Associated Non-Coding RNAs.LF347689 - JP 2014500723-A/155192: Polycomb-Associated Non-Coding RNAs.LF347690 - JP 2014500723-A/155193: Polycomb-Associated Non-Coding RNAs.LF347691 - JP 2014500723-A/155194: Polycomb-Associated Non-Coding RNAs.LF347692 - JP 2014500723-A/155195: Polycomb-Associated Non-Coding RNAs.LF347693 - JP 2014500723-A/155196: Polycomb-Associated Non-Coding RNAs.LF347696 - JP 2014500723-A/155199: Polycomb-Associated Non-Coding RNAs.LF347697 - JP 2014500723-A/155200: Polycomb-Associated Non-Coding RNAs.LF347698 - JP 2014500723-A/155201: Polycomb-Associated Non-Coding RNAs.LF347699 - JP 2014500723-A/155202: Polycomb-Associated Non-Coding RNAs.LF347700 - JP 2014500723-A/155203: Polycomb-Associated Non-Coding RNAs.LF347701 - JP 2014500723-A/155204: Polycomb-Associated Non-Coding RNAs.LF347702 - JP 2014500723-A/155205: Polycomb-Associated Non-Coding RNAs.LF347704 - JP 2014500723-A/155207: Polycomb-Associated Non-Coding RNAs.LF347705 - JP 2014500723-A/155208: Polycomb-Associated Non-Coding RNAs.LF347706 - JP 2014500723-A/155209: Polycomb-Associated Non-Coding RNAs.BC047454 - Homo sapiens integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51), mRNA (cDNA clone IMAGE:5294976).LF347708 - JP 2014500723-A/155211: Polycomb-Associated Non-Coding RNAs.LF347709 - JP 2014500723-A/155212: Polycomb-Associated Non-Coding RNAs.LF347710 - JP 2014500723-A/155213: Polycomb-Associated Non-Coding RNAs.JD089342 - Sequence 70366 from Patent EP1572962.JD381082 - Sequence 362106 from Patent EP1572962.LF347712 - JP 2014500723-A/155215: Polycomb-Associated Non-Coding RNAs.JD315107 - Sequence 296131 from Patent EP1572962.JD305055 - Sequence 286079 from Patent EP1572962.JD503057 - Sequence 484081 from Patent EP1572962.JD309916 - Sequence 290940 from Patent EP1572962.JD285145 - Sequence 266169 from Patent EP1572962.LF347713 - JP 2014500723-A/155216: Polycomb-Associated Non-Coding RNAs.JD553145 - Sequence 534169 from Patent EP1572962.JD095572 - Sequence 76596 from Patent EP1572962.LF347714 - JP 2014500723-A/155217: Polycomb-Associated Non-Coding RNAs.LF347715 - JP 2014500723-A/155218: Polycomb-Associated Non-Coding RNAs.JD435096 - Sequence 416120 from Patent EP1572962.JD168355 - Sequence 149379 from Patent EP1572962.JD284922 - Sequence 265946 from Patent EP1572962.JD486212 - Sequence 467236 from Patent EP1572962.JD534213 - Sequence 515237 from Patent EP1572962.LF347716 - JP 2014500723-A/155219: Polycomb-Associated Non-Coding RNAs.JD045825 - Sequence 26849 from Patent EP1572962.JD130831 - Sequence 111855 from Patent EP1572962.LF347717 - JP 2014500723-A/155220: Polycomb-Associated Non-Coding RNAs.JD087210 - Sequence 68234 from Patent EP1572962.JD557189 - Sequence 538213 from Patent EP1572962.LF347718 - JP 2014500723-A/155221: Polycomb-Associated Non-Coding RNAs.LF347719 - JP 2014500723-A/155222: Polycomb-Associated Non-Coding RNAs.JD298711 - Sequence 279735 from Patent EP1572962.LF347720 - JP 2014500723-A/155223: Polycomb-Associated Non-Coding RNAs.LF347721 - JP 2014500723-A/155224: Polycomb-Associated Non-Coding RNAs.LF347722 - JP 2014500723-A/155225: Polycomb-Associated Non-Coding RNAs.BC072686 - Homo sapiens cDNA clone IMAGE:6147239, partial cds.LF347723 - JP 2014500723-A/155226: Polycomb-Associated Non-Coding RNAs.LF347724 - JP 2014500723-A/155227: Polycomb-Associated Non-Coding RNAs.MA583264 - JP 2018138019-A/155190: Polycomb-Associated Non-Coding RNAs.MA583265 - JP 2018138019-A/155191: Polycomb-Associated Non-Coding RNAs.MA583266 - JP 2018138019-A/155192: Polycomb-Associated Non-Coding RNAs.MA583267 - JP 2018138019-A/155193: Polycomb-Associated Non-Coding RNAs.MA583268 - JP 2018138019-A/155194: Polycomb-Associated Non-Coding RNAs.MA583269 - JP 2018138019-A/155195: Polycomb-Associated Non-Coding RNAs.MA583270 - JP 2018138019-A/155196: Polycomb-Associated Non-Coding RNAs.MA583273 - JP 2018138019-A/155199: Polycomb-Associated Non-Coding RNAs.MA583274 - JP 2018138019-A/155200: Polycomb-Associated Non-Coding RNAs.MA583275 - JP 2018138019-A/155201: Polycomb-Associated Non-Coding RNAs.MA583276 - JP 2018138019-A/155202: Polycomb-Associated Non-Coding RNAs.MA583277 - JP 2018138019-A/155203: Polycomb-Associated Non-Coding RNAs.MA583278 - JP 2018138019-A/155204: Polycomb-Associated Non-Coding RNAs.MA583279 - JP 2018138019-A/155205: Polycomb-Associated Non-Coding RNAs.MA583281 - JP 2018138019-A/155207: Polycomb-Associated Non-Coding RNAs.MA583282 - JP 2018138019-A/155208: Polycomb-Associated Non-Coding RNAs.MA583283 - JP 2018138019-A/155209: Polycomb-Associated Non-Coding RNAs.MA583285 - JP 2018138019-A/155211: Polycomb-Associated Non-Coding RNAs.MA583286 - JP 2018138019-A/155212: Polycomb-Associated Non-Coding RNAs.MA583287 - JP 2018138019-A/155213: Polycomb-Associated Non-Coding RNAs.MA583289 - JP 2018138019-A/155215: Polycomb-Associated Non-Coding RNAs.MA583290 - JP 2018138019-A/155216: Polycomb-Associated Non-Coding RNAs.MA583291 - JP 2018138019-A/155217: Polycomb-Associated Non-Coding RNAs.MA583292 - JP 2018138019-A/155218: Polycomb-Associated Non-Coding RNAs.MA583293 - JP 2018138019-A/155219: Polycomb-Associated Non-Coding RNAs.MA583294 - JP 2018138019-A/155220: Polycomb-Associated Non-Coding RNAs.MA583295 - JP 2018138019-A/155221: Polycomb-Associated Non-Coding RNAs.MA583296 - JP 2018138019-A/155222: Polycomb-Associated Non-Coding RNAs.MA583297 - JP 2018138019-A/155223: Polycomb-Associated Non-Coding RNAs.MA583298 - JP 2018138019-A/155224: Polycomb-Associated Non-Coding RNAs.MA583299 - JP 2018138019-A/155225: Polycomb-Associated Non-Coding RNAs.MA583300 - JP 2018138019-A/155226: Polycomb-Associated Non-Coding RNAs.MA583301 - JP 2018138019-A/155227: Polycomb-Associated Non-Coding RNAs.MA441318 - JP 2018138019-A/13244: Polycomb-Associated Non-Coding RNAs.MA449429 - JP 2018138019-A/21355: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
BioCarta from NCI Cancer Genome Anatomy Project h_edg1Pathway - Phospholipids as signalling intermediaries
Reactome (by CSHL, EBI, and GO) Protein P06756 (Reactome details) participates in the following event(s):R-HSA-210304 Interaction of integrin alphaVbeta3 with PECAM1
R-HSA-265423 Interaction of integrin alphaVbeta3 with Fibrillin
R-HSA-265425 Interaction of integrin alphaVbeta3 with von Willbrand Factor
R-HSA-265426 Interaction of integrin alphaVbeta3 with Tenascin
R-HSA-265427 Interaction of integrin alphaVbeta3 with IPSP (Bone sialoprotein 2)
R-NUL-2731085 Syndecan-1 binds integrin alphaVbeta3
R-HSA-2731123 Syndecan-1 binds Integrin alphaVbeta3
R-HSA-4086200 Dentin matrix protein 1 binds integrin alphaVbeta3
R-HSA-4088218 Tetrastatin binds integrin alphaVbeta3
R-HSA-5218818 Integrin alphaVbeta3 binds p-6Y-VEGFR2
R-HSA-4086132 Dentin phosphoprotein binds integrin alphaVbeta1
R-HSA-2731081 Syndecan-1 binds Integrin alphaVBeta5
R-HSA-6799350 Exocytosis of specific granule membrane proteins
R-HSA-5218836 PTK2beta binds alphaVbeta3
R-HSA-374686 L1 interaction with Integrins
R-HSA-2395320 Latent TGF-beta-1 binds integrins
R-HSA-2328037 Fibrillin-1 binds integrins
R-HSA-2396029 Latent TGF-beta-3 binds integrins
R-HSA-2426259 COMP binds Integrin alpha5beta1, Integrin alphaVbeta3, CD47
R-HSA-2426471 VTN binds integrins alphaVbeta1, alphaVbeta3, alpha3beta5, alphaIIBbeta3
R-HSA-2681667 TNC binds Integrin alphaVbeta3, alphaVbeta6, alpha2beta1, alpha7beta1, alpha8beta1, alpha9beta1, alphaXbeta1
R-HSA-2731074 Syndecan-1 binds Integrins alpha2beta1, (alpha6beta4)
R-HSA-2752125 SPP1 (osteopontin) binds integrins alphaVbeta1, alphaVbeta3, alphaVbeta5
R-HSA-4085083 Tumstatin binds integrin alphaVbeta 3, alpha3beta1
R-HSA-4085087 Canstatin binds integrins alphaVbeta3, alphaVbeta5
R-HSA-4088264 Endostatin binds integrin alphaVbeta3, alphaVbeta5, alpha3beta1, alpha5beta1
R-HSA-216050 Integrins alpha4beta1, alpha8beta1, alphaVbeta1, alphaVbeta3, alphaVbeta6 bind Fibronectin matrix
R-HSA-216076 VTN (vitronectin) binds Integrin alphaVbeta3, alphaVbeta5, alphaVbeta8
R-HSA-2467436 AGRN binds Integrins alphaVbeta1 (Other beta1-containing integrins)
R-HSA-216051 Integrin alpha6beta1, alpha7beta1, alpha1beta1, alpha2beta1 bind laminin-111
R-NUL-3907289 Integrin alpha6beta1, alpha7beta1, alpha1beta1, alpha2beta1, alphaVbeta1 bind laminin-111
R-HSA-1236958 Interaction of particulate antigens with dendritic cell receptors
R-HSA-1236956 Engulfment of particulate antigen into phagocytic vesicle
R-HSA-5218830 SRC-1 phosphorylates PTK2-beta
R-HSA-5218851 p-Y402-PTK2B phosphorylates p-5Y,S732-PTK2 on Y407
R-HSA-210990 PECAM1 interactions
R-HSA-216083 Integrin cell surface interactions
R-HSA-3000170 Syndecan interactions
R-HSA-3000178 ECM proteoglycans
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-6798695 Neutrophil degranulation
R-HSA-445144 Signal transduction by L1
R-HSA-2129379 Molecules associated with elastic fibres
R-HSA-1566948 Elastic fibre formation
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-1474244 Extracellular matrix organization
R-HSA-3000171 Non-integrin membrane-ECM interactions
R-HSA-194138 Signaling by VEGF
R-HSA-3000157 Laminin interactions
R-HSA-1236973 Cross-presentation of particulate exogenous antigens (phagosomes)
R-HSA-168249 Innate Immune System
R-HSA-373760 L1CAM interactions
R-HSA-109582 Hemostasis
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-1236975 Antigen processing-Cross presentation
R-HSA-168256 Immune System
R-HSA-422475 Axon guidance
R-HSA-162582 Signal Transduction
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-1266738 Developmental Biology
R-HSA-1280218 Adaptive Immune System
Other Names for This Gene
Alternate Gene Symbols: A0AV67, B0LPF4, B7Z883, B7ZLX0, D3DPG8, E7EWZ6, ENST00000261023.1, ENST00000261023.2, ENST00000261023.3, ENST00000261023.4, ENST00000261023.5, ENST00000261023.6, ENST00000261023.7, ITAV_HUMAN, ITGAV , MSK8 , NM_002210, P06756, Q53SK4, Q59EB7, Q6LD15, uc317gmr.1, uc317gmr.2, VNRA , VTNR UCSC ID: ENST00000261023.8_7RefSeq Accession: NM_002210.5
Protein: P06756
(aka ITAV_HUMAN)
Gene Model Information
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.