Human Gene JAK3 (ENST00000458235.7_7) from GENCODE V47lift37
  Description: Janus kinase 3 (from RefSeq NM_000215.4)
Gencode Transcript: ENST00000458235.7_7
Gencode Gene: ENSG00000105639.21_10
Transcript (Including UTRs)
   Position: hg19 chr19:17,935,591-17,958,791 Size: 23,201 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr19:17,937,552-17,955,226 Size: 17,675 Coding Exon Count: 23 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:17,935,591-17,958,791)mRNA (may differ from genome)Protein (1124 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: JAK3_HUMAN
DESCRIPTION: RecName: Full=Tyrosine-protein kinase JAK3; EC=2.7.10.2; AltName: Full=Janus kinase 3; Short=JAK-3; AltName: Full=Leukocyte janus kinase; Short=L-JAK;
FUNCTION: Non-receptor tyrosine kinase involved in various processes such as cell growth, development, or differentiation. Mediates essential signaling events in both innate and adaptive immunity and plays a crucial role in hematopoiesis during T-cells development. In the cytoplasm, plays a pivotal role in signal transduction via its association with type I receptors sharing the common subunit gamma such as IL2R, IL4R, IL7R, IL9R, IL15R and IL21R. Following ligand binding to cell surface receptors, phosphorylates specific tyrosine residues on the cytoplasmic tails of the receptor, creating docking sites for STATs proteins. Subsequently, phosphorylates the STATs proteins once they are recruited to the receptor. Phosphorylated STATs then form homodimer or heterodimers and translocate to the nucleus to activate gene transcription. For example, upon IL2R activation by IL2, JAK1 and JAK3 molecules bind to IL2R beta (IL2RB) and gamma chain (IL2RG) subunits inducing the tyrosine phosphorylation of both receptor subunits on their cytoplasmic domain. Then, STAT5A AND STAT5B are recruited, phosphorylated and activated by JAK1 and JAK3. Once activated, dimerized STAT5 translocates to the nucleus and promotes the transcription of specific target genes in a cytokine-specific fashion.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
SUBUNIT: Interacts with STAM2 and MYO18A (By similarity). Interacts with SHB.
INTERACTION: Q07666:KHDRBS1; NbExp=2; IntAct=EBI-518246, EBI-1364;
SUBCELLULAR LOCATION: Endomembrane system; Peripheral membrane protein (By similarity). Cytoplasm (By similarity).
TISSUE SPECIFICITY: In NK cells and an NK-like cell line but not in resting T-cells or in other tissues. The S-form is more commonly seen in hematopoietic lines, whereas the B-form is detected in cells both of hematopoietic and epithelial origins.
DOMAIN: Possesses two phosphotransferase domains. The second one probably contains the catalytic domain (By similarity), while the presence of slight differences suggest a different role for domain 1.
PTM: Tyrosine phosphorylated in response to IL-2 and IL-4.
DISEASE: Defects in JAK3 are a cause of severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell- positive/NK-cell-negative (T(-)B(+)NK(-) SCID) [MIM:600802]. A form of severe combined immunodeficiency (SCID), a genetically and clinically heterogeneous group of rare congenital disorders characterized by impairment of both humoral and cell-mediated immunity, leukopenia, and low or absent antibody levels. Patients present in infancy recurrent, persistent infections by opportunistic organisms. The common characteristic of all types of SCID is absence of T-cell-mediated cellular immunity due to a defect in T-cell development.
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. JAK subfamily.
SIMILARITY: Contains 1 FERM domain.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 SH2 domain.
SEQUENCE CAUTION: Sequence=AAC50227.1; Type=Miscellaneous discrepancy; Note=Wrong choice of CDS. Was erroneously described as an isoform JAK3M while it is a fragmentary mRNA of INSL3;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/JAK3ID41032ch19p13.html";
WEB RESOURCE: Name=JAK3base; Note=JAK3 mutation db; URL="http://bioinf.uta.fi/JAK3base/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/JAK3";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/jak3/";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: JAK3
Diseases sorted by gene-association score: scid, autosomal recessive, t-negative/b-positive type* (1550), jak3-deficient severe combined immunodeficiency* (419), severe combined immunodeficiency, b cell-negative* (231), severe combined immune deficiency, autosomal recessive, t cell-negative, b cell-positive, nk cell-negative, jak3-related* (100), severe combined immunodeficiency (31), janus kinase-3 deficiency (23), severe combined immunodeficiency, x-linked (13), severe combined immune deficiency (13), b cell linker protein deficiency (11), t-cell prolymphocytic leukemia (9), anaplastic large cell lymphoma (9), alk-positive anaplastic large cell lymphoma (8), lactocele (8), cd3delta deficiency (7), combined t cell and b cell immunodeficiency (7), jacobsen syndrome (7), megakaryocytic leukemia (7), polycythemia vera, somatic (7), interleukin-7 receptor alpha deficiency (6), bone marrow cancer (3), juvenile myelomonocytic leukemia (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 70.72 RPKM in Whole Blood
Total median expression: 266.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.6050-0.192 Picture PostScript Text
3' UTR -685.811961-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019749 - Band_41_domain
IPR000299 - FERM_domain
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR000980 - SH2
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom
IPR016251 - Tyr_kinase_non-rcpt_Jak/Tyk2
IPR020775 - Tyr_kinase_non-rcpt_Jak3

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF17887 - Jak1 pleckstrin homology-like domain
PF18377 - FERM F2 acyl-CoA binding protein-like domain
PF18379 - FERM F1 ubiquitin-like domain

SCOP Domains:
50729 - PH domain-like
56112 - Protein kinase-like (PK-like)
55550 - SH2 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1YVJ - X-ray MuPIT 3LXK - X-ray MuPIT 3LXL - X-ray MuPIT 3PJC - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P52333
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004715 non-membrane spanning protein tyrosine kinase activity
GO:0005088 Ras guanyl-nucleotide exchange factor activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019903 protein phosphatase binding

Biological Process:
GO:0000165 MAPK cascade
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0002731 negative regulation of dendritic cell cytokine production
GO:0006468 protein phosphorylation
GO:0006954 inflammatory response
GO:0007167 enzyme linked receptor protein signaling pathway
GO:0007260 tyrosine phosphorylation of STAT protein
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0019221 cytokine-mediated signaling pathway
GO:0030183 B cell differentiation
GO:0030218 erythrocyte differentiation
GO:0032693 negative regulation of interleukin-10 production
GO:0032695 negative regulation of interleukin-12 production
GO:0035556 intracellular signal transduction
GO:0035723 interleukin-15-mediated signaling pathway
GO:0035771 interleukin-4-mediated signaling pathway
GO:0038083 peptidyl-tyrosine autophosphorylation
GO:0038110 interleukin-2-mediated signaling pathway
GO:0038111 interleukin-7-mediated signaling pathway
GO:0038113 interleukin-9-mediated signaling pathway
GO:0038114 interleukin-21-mediated signaling pathway
GO:0042102 positive regulation of T cell proliferation
GO:0042981 regulation of apoptotic process
GO:0043029 T cell homeostasis
GO:0045087 innate immune response
GO:0045221 negative regulation of FasL biosynthetic process
GO:0045626 negative regulation of T-helper 1 cell differentiation
GO:0046425 regulation of JAK-STAT cascade
GO:0050868 negative regulation of T cell activation
GO:0060397 JAK-STAT cascade involved in growth hormone signaling pathway
GO:0070232 regulation of T cell apoptotic process
GO:0070244 negative regulation of thymocyte apoptotic process
GO:0070669 response to interleukin-2
GO:0070670 response to interleukin-4
GO:0070672 response to interleukin-15
GO:0071104 response to interleukin-9

Cellular Component:
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane


-  Descriptions from all associated GenBank mRNAs
  BC028068 - Homo sapiens Janus kinase 3 (a protein tyrosine kinase, leukocyte), mRNA (cDNA clone MGC:39993 IMAGE:5212575), complete cds.
U31601 - Human tyrosine protein kinase (Jak3B) splice variant mRNA, complete cds.
AK296383 - Homo sapiens cDNA FLJ60614 complete cds, highly similar to Tyrosine-protein kinase JAK3 (EC 2.7.10.2).
AK304392 - Homo sapiens cDNA FLJ50368 complete cds, moderately similar to Tyrosine-protein kinase JAK3 (EC 2.7.10.2).
JD331078 - Sequence 312102 from Patent EP1572962.
JD242753 - Sequence 223777 from Patent EP1572962.
U09607 - Human JAK family protein tyrosine kinase (JAK3) mRNA, complete cds.
JD522083 - Sequence 503107 from Patent EP1572962.
JD341813 - Sequence 322837 from Patent EP1572962.
JD107878 - Sequence 88902 from Patent EP1572962.
JD064437 - Sequence 45461 from Patent EP1572962.
JD237804 - Sequence 218828 from Patent EP1572962.
JD332736 - Sequence 313760 from Patent EP1572962.
JD229307 - Sequence 210331 from Patent EP1572962.
JD412988 - Sequence 394012 from Patent EP1572962.
JD152159 - Sequence 133183 from Patent EP1572962.
JD499101 - Sequence 480125 from Patent EP1572962.
JD257861 - Sequence 238885 from Patent EP1572962.
JD122103 - Sequence 103127 from Patent EP1572962.
JD465056 - Sequence 446080 from Patent EP1572962.
JD140522 - Sequence 121546 from Patent EP1572962.
JD523579 - Sequence 504603 from Patent EP1572962.
JD122102 - Sequence 103126 from Patent EP1572962.
JD457648 - Sequence 438672 from Patent EP1572962.
JD457649 - Sequence 438673 from Patent EP1572962.
JD499100 - Sequence 480124 from Patent EP1572962.
JD239735 - Sequence 220759 from Patent EP1572962.
JD499099 - Sequence 480123 from Patent EP1572962.
JD330137 - Sequence 311161 from Patent EP1572962.
JD209774 - Sequence 190798 from Patent EP1572962.
JD492804 - Sequence 473828 from Patent EP1572962.
JD298885 - Sequence 279909 from Patent EP1572962.
U31317 - Human JAK family tyrosine protein kinase splice variant (hJak3S) mRNA, partial cds.
JD060592 - Sequence 41616 from Patent EP1572962.
U08340 - Human clone NTK16 tyrosine kinase mRNA, partial cds.
E08798 - cDNA encoding novel human tyrosine kinase.
KU178153 - Homo sapiens Janus kinase 3 isoform 1 (JAK3) mRNA, partial cds, alternatively spliced.
KU178154 - Homo sapiens Janus kinase 3 isoform 2 (JAK3) mRNA, complete cds, alternatively spliced.
U57096 - Human janus kinase 3 (Jak3) mRNA, partial cds.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_il7Pathway - IL-7 Signal Transduction
h_il2rbPathway - IL-2 Receptor Beta Chain in T cell Activation
h_stat3Pathway - Stat3 Signaling Pathway
h_il6Pathway - IL 6 signaling pathway
h_il2Pathway - IL 2 signaling pathway
h_il4Pathway - IL 4 signaling pathway
h_il22bppathway - IL22 Soluble Receptor Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P52333 (Reactome details) participates in the following event(s):

R-HSA-451895 IL2RG binds JAK3
R-HSA-508513 PTK2B binds JAK3
R-HSA-449958 IL7:IL7R:JAK1 binds IL2RG:JAK3
R-HSA-450063 Interleukin-2: IL2 receptor alpha:beta binds IL2 receptor gamma subunit
R-HSA-6786092 IL4:IL4R:JAK2 binds IL2RG:JAK3
R-HSA-8963734 IL9 binds IL9R:JAK1 and IL2RG:JAK3
R-HSA-451942 Within the IL-2R complex JAK3 phosphorylates JAK1
R-HSA-452122 JAK1 phosphorylates Y338, Y392 and Y510 of IL2RB
R-HSA-508292 SYK binds IL2RB
R-HSA-452091 Phosphorylation of IL2RB Y338 enables SHC recruitment
R-HSA-452108 Phosphorylation of IL2RB Y338, Y392 or Y510 enables STAT recruitment
R-HSA-919404 Phosphorylated STAT5 is released
R-HSA-1295516 IL7:p-Y449-IL7R:JAK1:IL2RG:JAK3 binds PI3K regulatory subunits
R-HSA-1295519 IL7R is phosphorylated on Y499
R-HSA-6785165 p-STAT5A, p-STAT5B dissociate from IL7:p-Y449-IL7R:JAK1:IL2RG:p-JAK3:p-STAT5A,p-STAT5B
R-HSA-8983394 IL15:IL15RA:p-Y-IL2RB:p-Y-JAK1:p-Y-IL2RG:p-Y-JAK3:p-Y-SHC1 binds GRB2
R-HSA-508282 SYK is a substrate for JAK1
R-HSA-452100 SHC1 bound to IL2 receptor is phosphorylated
R-HSA-452097 Recruited STAT5 is phosphorylated
R-HSA-6786124 STAT3,STAT6 bind p-Y-IL4R
R-HSA-453111 Phosphorylated SHC recruits GRB2:SOS1
R-HSA-913374 Phosphorylated SHC1 recruits SHIP
R-HSA-6786095 JAK1 phosphorylates STAT3,STAT6
R-HSA-508247 Gab2 binds the p85 subunit of Class 1A PI3 kinases
R-HSA-913424 The SHC1:SHIP1 complex is stabilized by GRB2
R-HSA-5672965 RAS GEFs promote RAS nucleotide exchange
R-HSA-1266695 Interleukin-7 signaling
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-8985947 Interleukin-9 signaling
R-HSA-9020558 Interleukin-2 signaling
R-HSA-8983432 Interleukin-15 signaling
R-HSA-9020958 Interleukin-21 signaling
R-HSA-8854691 Interleukin-20 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-451927 Interleukin-2 family signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System
R-HSA-912526 Interleukin receptor SHC signaling
R-HSA-512988 Interleukin-3, 5 and GM-CSF signaling
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000458235.1, ENST00000458235.2, ENST00000458235.3, ENST00000458235.4, ENST00000458235.5, ENST00000458235.6, JAK3 , JAK3_HUMAN, NM_000215, P52333, Q13259, Q13260, Q13611, Q8N1E8, Q99699, Q9Y6S2, uc320zbk.1, uc320zbk.2
UCSC ID: ENST00000458235.7_7
RefSeq Accession: NM_000215.4
Protein: P52333 (aka JAK3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.