Human Gene JMJD7-PLA2G4B (ENST00000342159.6_5) from GENCODE V47lift37
  Description: JMJD7-PLA2G4B readthrough, transcript variant 3 (from RefSeq NM_001198588.2)
Gencode Transcript: ENST00000342159.6_5
Gencode Gene: ENSG00000168970.22_9
Transcript (Including UTRs)
   Position: hg19 chr15:42,120,315-42,140,164 Size: 19,850 Total Exon Count: 24 Strand: +
Coding Region
   Position: hg19 chr15:42,120,323-42,139,888 Size: 19,566 Coding Exon Count: 24 

Page IndexSequence and LinksPrimersGene AllelesMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:42,120,315-42,140,164)mRNA (may differ from genome)Protein (893 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIPubMedWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -104.30276-0.378 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  BC172355 - Synthetic construct Homo sapiens clone IMAGE:100069049, MGC:199060 JMJD7-PLA2G4B readthrough transcript (JMJD7-PLA2G4B) mRNA, encodes complete protein.
AK289833 - Homo sapiens cDNA FLJ77014 complete cds, highly similar to Homo sapiens phospholipase A2, group IVB (cytosolic), mRNA.
AB209150 - Homo sapiens mRNA for phospholipase A2, group IVB variant protein.
AK000814 - Homo sapiens cDNA FLJ20807 fis, clone ADSE01784.
BC139899 - Homo sapiens jumonji domain containing 7, mRNA (cDNA clone IMAGE:40147182), complete cds.
AK000663 - Homo sapiens cDNA FLJ20656 fis, clone KAT01382, highly similar to AF065215 Homo sapiens cytosolic phospholipase A2 beta.
AK225503 - Homo sapiens mRNA for PLA2G4B protein variant, clone: KAT01382.
BC067834 - Homo sapiens jumonji domain containing 7, mRNA (cDNA clone IMAGE:5311075), with apparent retained intron.
AK000550 - Homo sapiens cDNA FLJ20543 fis, clone KAT11396, highly similar to AF065215 Homo sapiens cytosolic phospholipase A2 beta.
AK290051 - Homo sapiens cDNA FLJ78330 complete cds.
AF065215 - Homo sapiens cytosolic phospholipase A2 beta (cPLA2 beta) mRNA, complete cds.
AF065216 - Homo sapiens cytosolic phospholipase A2 beta (cPLA2 beta) precursor RNA, complete sequence.
DQ523799 - Homo sapiens group IVB cytosolic phospholipase A2 beta splice variant 2 mRNA, complete cds, alternatively spliced.
DQ523800 - Homo sapiens group IVB cytosolic phospholipase A2 beta splice variant 3 mRNA, complete cds, alternatively spliced.
BC110415 - Homo sapiens jumonji domain containing 7, mRNA (cDNA clone IMAGE:5762208), with apparent retained intron.
AF121908 - Homo sapiens cytosolic phospholipase A2 beta mRNA, complete cds.
BC025290 - Homo sapiens jumonji domain containing 7, mRNA (cDNA clone IMAGE:4556397), complete cds.
CU692962 - Synthetic construct Homo sapiens gateway clone IMAGE:100021919 5' read PLA2G4B mRNA.
BC013415 - Homo sapiens phospholipase A2, group IVB (cytosolic), mRNA (cDNA clone IMAGE:3528417), partial cds.
AK310651 - Homo sapiens cDNA, FLJ17693.
AK299419 - Homo sapiens cDNA FLJ53173 complete cds, highly similar to Cytosolic phospholipase A2 beta (EC 3.1.1.4).
AK124489 - Homo sapiens cDNA FLJ42498 fis, clone BRACE2035381, highly similar to Homo sapiens phospholipase A2, group IVB (cytosolic) (PLA2G4B).
BX648318 - Homo sapiens mRNA; cDNA DKFZp686N12131 (from clone DKFZp686N12131).
JD392688 - Sequence 373712 from Patent EP1572962.
JD393259 - Sequence 374283 from Patent EP1572962.
JD454037 - Sequence 435061 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000342159.1, ENST00000342159.2, ENST00000342159.3, ENST00000342159.4, ENST00000342159.5, NM_001198588, uc317wgh.1, uc317wgh.2
UCSC ID: ENST00000342159.6_5
RefSeq Accession: NM_001198588.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.