Human Gene KIF13A (ENST00000259711.11_8) from GENCODE V47lift37
  Description: kinesin family member 13A, transcript variant 1 (from RefSeq NM_022113.6)
Gencode Transcript: ENST00000259711.11_8
Gencode Gene: ENSG00000137177.20_12
Transcript (Including UTRs)
   Position: hg19 chr6:17,763,924-17,987,866 Size: 223,943 Total Exon Count: 39 Strand: -
Coding Region
   Position: hg19 chr6:17,764,341-17,987,694 Size: 223,354 Coding Exon Count: 39 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:17,763,924-17,987,866)mRNA (may differ from genome)Protein (1805 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KI13A_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF13A; AltName: Full=Kinesin-like protein RBKIN;
FUNCTION: Plus end-directed microtubule-dependent motor protein involved in intracellular transport and regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis and cytokinesis. Mediates the transport of M6PR- containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. Also required for the abcission step in cytokinesis: mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis.
SUBUNIT: Interacts with AP2B1 (By similarity). Interacts with ZFYVE26. Interacts with AP1G1 and AP1G2.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Midbody. Endosome membrane. Golgi apparatus membrane (By similarity). Note=Recruited to the midbody during cytokinesis.
TISSUE SPECIFICITY: Widely expressed, with highest levels in heart, brain and skeletal muscle.
DEVELOPMENTAL STAGE: Expressed at very low level in most fetal tissues, but at higher levels in skeletal muscle and lung.
SIMILARITY: Belongs to the kinesin-like protein family.
SIMILARITY: Contains 1 FHA domain.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=CAI21670.1; Type=Erroneous gene model prediction; Sequence=CAI21671.1; Type=Erroneous gene model prediction; Sequence=CAI40947.1; Type=Erroneous gene model prediction; Sequence=CAI40948.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.49 RPKM in Artery - Coronary
Total median expression: 340.09 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.50172-0.654 Picture PostScript Text
3' UTR -90.60417-0.217 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000253 - FHA_dom
IPR022140 - KIF1B
IPR022164 - Kinesin-like
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom
IPR008984 - SMAD_FHA_domain

Pfam Domains:
PF00225 - Kinesin motor domain
PF00498 - FHA domain
PF12423 - Kinesin protein 1B
PF12473 - Kinesin protein
PF16183 - Kinesin-associated
PF16796 - Microtubule binding

SCOP Domains:
49879 - SMAD/FHA domain
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q9H1H9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity

Biological Process:
GO:0006886 intracellular protein transport
GO:0007018 microtubule-based movement
GO:0007049 cell cycle
GO:0008333 endosome to lysosome transport
GO:0015031 protein transport
GO:0030705 cytoskeleton-dependent intracellular transport
GO:0032438 melanosome organization
GO:0032465 regulation of cytokinesis
GO:0035459 cargo loading into vesicle
GO:0043001 Golgi to plasma membrane protein transport
GO:0051301 cell division
GO:0072383 plus-end-directed vesicle transport along microtubule

Cellular Component:
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005794 Golgi apparatus
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0030496 midbody
GO:0032588 trans-Golgi network membrane


-  Descriptions from all associated GenBank mRNAs
  LP896415 - Sequence 1279 from Patent EP3253886.
AJ291579 - Homo sapiens mRNA for KINESIN-13A2 (KIN13A gene).
AJ291578 - Homo sapiens mRNA for KINESIN-13A1 (KIN13A gene).
AY014403 - Homo sapiens kinesin-like protein RBKIN1 (RBKIN) mRNA, complete cds, alternatively spliced.
AY014404 - Homo sapiens kinesin-like protein RBKIN2 (RBKIN) mRNA, complete cds, alternatively spliced.
BC127115 - Homo sapiens kinesin family member 13A, mRNA (cDNA clone MGC:150707 IMAGE:40125246), complete cds.
BC127116 - Homo sapiens kinesin family member 13A, mRNA (cDNA clone MGC:150708 IMAGE:40125251), complete cds.
BC001730 - Homo sapiens cDNA clone IMAGE:3353875, containing frame-shift errors.
BC023613 - Homo sapiens cDNA clone IMAGE:4646849, containing frame-shift errors.
BC062673 - Homo sapiens kinesin family member 13A, mRNA (cDNA clone IMAGE:6654466), with apparent retained intron.
AK130742 - Homo sapiens cDNA FLJ27232 fis, clone SYN06360.
JD204951 - Sequence 185975 from Patent EP1572962.
JD486786 - Sequence 467810 from Patent EP1572962.
JD404219 - Sequence 385243 from Patent EP1572962.
AK025303 - Homo sapiens cDNA: FLJ21650 fis, clone COL08516.
AK225214 - Homo sapiens mRNA for kinesin family member 13A variant, clone: COL08516.
JD336425 - Sequence 317449 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H1H9 (Reactome details) participates in the following event(s):

R-HSA-390470 Association of CCT/TriC with other substrates during biosynthesis (unknown chaperone)
R-HSA-390471 Association of TriC/CCT with target proteins during biosynthesis
R-HSA-390466 Chaperonin-mediated protein folding
R-HSA-391251 Protein folding
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A0JP21, A0JP22, ENST00000259711.1, ENST00000259711.10, ENST00000259711.2, ENST00000259711.3, ENST00000259711.4, ENST00000259711.5, ENST00000259711.6, ENST00000259711.7, ENST00000259711.8, ENST00000259711.9, F2Z382, KI13A_HUMAN, NM_022113, Q5THQ2, Q5THQ3, Q9H193, Q9H194, Q9H1H8, Q9H1H9, RBKIN, uc317ghm.1, uc317ghm.2
UCSC ID: ENST00000259711.11_8
RefSeq Accession: NM_022113.6
Protein: Q9H1H9 (aka KI13A_HUMAN or K13A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.