Human Gene KIF26A (ENST00000423312.7_10) from GENCODE V47lift37
  Description: kinesin family member 26A (from RefSeq NM_015656.2)
Gencode Transcript: ENST00000423312.7_10
Gencode Gene: ENSG00000066735.16_12
Transcript (Including UTRs)
   Position: hg19 chr14:104,604,924-104,647,231 Size: 42,308 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr14:104,605,060-104,646,127 Size: 41,068 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:104,604,924-104,647,231)mRNA (may differ from genome)Protein (1882 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KI26A_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF26A;
FUNCTION: Atypical kinesin that plays a key role in enteric neuron development. Acts by repressing a cell growth signaling pathway in the enteric nervous system development, possibly via its interaction with GRB2 that prevents GRB2-binding to SHC, thereby attenating the GDNF-Ret signaling. Binds to microtubules but lacks microtubule-based motility due to the absence of ATPase activity (By similarity).
SUBUNIT: Interacts with GRB2 (via SH2 domain) (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (Probable).
SIMILARITY: Belongs to the kinesin-like protein family. KIF26 subfamily.
SIMILARITY: Contains 1 kinesin-motor domain.
CAUTION: In contrast to other kinesin-like proteins, residues required for ATPase activity are missing.
SEQUENCE CAUTION: Sequence=AAH09415.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.66 RPKM in Cervix - Endocervix
Total median expression: 77.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -78.70136-0.579 Picture PostScript Text
3' UTR -435.901104-0.395 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF16796 - Microtubule binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q9ULI4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003777 microtubule motor activity
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity

Biological Process:
GO:0001560 regulation of cell growth by extracellular stimulus
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0007018 microtubule-based movement
GO:0009968 negative regulation of signal transduction
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0048484 enteric nervous system development

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule


-  Descriptions from all associated GenBank mRNAs
  AB290161 - Homo sapiens mRNA for KIF26A/KIAA1236 variant protein, partial cds.
AB033062 - Homo sapiens mRNA for KIAA1236 protein, partial cds.
JD045020 - Sequence 26044 from Patent EP1572962.
JD068727 - Sequence 49751 from Patent EP1572962.
JD395101 - Sequence 376125 from Patent EP1572962.
JD462974 - Sequence 443998 from Patent EP1572962.
JD448108 - Sequence 429132 from Patent EP1572962.
JD310650 - Sequence 291674 from Patent EP1572962.
JD319110 - Sequence 300134 from Patent EP1572962.
JD547613 - Sequence 528637 from Patent EP1572962.
JD050333 - Sequence 31357 from Patent EP1572962.
BC025353 - Homo sapiens, Similar to DKFZP434N178 protein, clone IMAGE:4903081, mRNA, partial cds.
BC009415 - Homo sapiens kinesin family member 26A, mRNA (cDNA clone IMAGE:3502885), complete cds.
AL117589 - Homo sapiens mRNA; cDNA DKFZp434N178 (from clone DKFZp434N178).
AK026406 - Homo sapiens cDNA: FLJ22753 fis, clone KAIA0597.
KJ904713 - Synthetic construct Homo sapiens clone ccsbBroadEn_14107 KIF26A gene, encodes complete protein.
JD205860 - Sequence 186884 from Patent EP1572962.
JD446688 - Sequence 427712 from Patent EP1572962.
JD478195 - Sequence 459219 from Patent EP1572962.
JD394587 - Sequence 375611 from Patent EP1572962.
JD408079 - Sequence 389103 from Patent EP1572962.
JD458915 - Sequence 439939 from Patent EP1572962.
JD565412 - Sequence 546436 from Patent EP1572962.
JD394387 - Sequence 375411 from Patent EP1572962.
JD283710 - Sequence 264734 from Patent EP1572962.
JD494670 - Sequence 475694 from Patent EP1572962.
JD483261 - Sequence 464285 from Patent EP1572962.
JD337083 - Sequence 318107 from Patent EP1572962.
JD503346 - Sequence 484370 from Patent EP1572962.
JD544404 - Sequence 525428 from Patent EP1572962.
JD277291 - Sequence 258315 from Patent EP1572962.
JD225040 - Sequence 206064 from Patent EP1572962.
JD433086 - Sequence 414110 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9ULI4 (Reactome details) participates in the following event(s):

R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-983189 Kinesins
R-HSA-2132295 MHC class II antigen presentation
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-1280218 Adaptive Immune System
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-109582 Hemostasis
R-HSA-168256 Immune System
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000423312.1, ENST00000423312.2, ENST00000423312.3, ENST00000423312.4, ENST00000423312.5, ENST00000423312.6, KI26A_HUMAN, KIAA1236, NM_015656, Q8TAZ7, Q96GK3, Q9UFL3, Q9ULI4, uc319spv.1, uc319spv.2
UCSC ID: ENST00000423312.7_10
RefSeq Accession: NM_015656.2
Protein: Q9ULI4 (aka KI26A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.