Human Gene KIF7 (ENST00000394412.8_8) from GENCODE V47lift37
  Description: kinesin family member 7 (from RefSeq NM_198525.3)
Gencode Transcript: ENST00000394412.8_8
Gencode Gene: ENSG00000166813.17_12
Transcript (Including UTRs)
   Position: hg19 chr15:90,171,208-90,198,698 Size: 27,491 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr15:90,171,650-90,196,161 Size: 24,512 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:90,171,208-90,198,698)mRNA (may differ from genome)Protein (1343 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KIF7_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF7;
FUNCTION: Acts as both a negative and positive regulator of sonic hedgehog (Shh) pathway, acting downstream of SMO. Negatively regulates the pathway by preventing inappropriate activation of the transcriptional activator GLI2 in the absence of ligand. Positively regulates the pathway by preventing the processing of the transcription factor GLI3 into its repressor form. Required for efficient localization of GLI3 to cilia in response to Shh. Affects microtubular dynamics and acts as a ciliary motor.
SUBUNIT: Interacts with GLI1, GLI2, GLI3, SMO and SUFU. Interacts with NPHP1.
SUBCELLULAR LOCATION: Cell projection, cilium. Note=SMO is required for its accumulation within cilia. Moves from the cilia base to the cilia tip in response to activation of the Shh pathway.
TISSUE SPECIFICITY: Embryonic stem cells, melanotic melanoma and Jurkat T-cells. Expressed in heart, lung, liver, kidney, testis, retina, placenta, pancreas, colon, small intestin, prostate and thymus.
DISEASE: Note=Ciliary dysfunction leads to a broad spectrum of disorders, collectively termed ciliopathies. The ciliopathy range of diseases includes Meckel-Gruber syndrome, Bardet-Biedl syndrome, Joubert syndrome, and hydrolethalus syndrome among others. Single-locus allelism is insufficient to explain the variable penetrance and expressivity of such disorders, leading to the suggestion that variations across multiple sites of the ciliary proteome influence the clinical outcome. Primary ciliopathy loci can be modulated by pathogenic lesions in other ciliary genes to either exacerbate overall severity or induce specific endophenotypes. KIF7 may be causally associated with diverse ciliopathies, and also acts as a modifier gene across the ciliopathy spectrum.
DISEASE: Defects in KIF7 may be a cause of Bardet-Biedl syndrome (BBS) [MIM:209900]. A syndrome characterized by usually severe pigmentary retinopathy, early-onset obesity, polydactyly, hypogenitalism, renal malformation and mental retardation. Secondary features include diabetes mellitus, hypertension and congenital heart disease. Bardet-Biedl syndrome inheritance is autosomal recessive, but three mutated alleles (two at one locus, and a third at a second locus) may be required for clinical manifestation of some forms of the disease. Note=Heterozygous missense mutations in KIF7 may genetically interact with other BBS genes and contribute to disease manifestation and severity.
DISEASE: Defects in KIF7 are the cause of hydrolethalus syndrome type 2 (HLS2) [MIM:614120]. HLS2 is an embryonic lethal disorder characterized by hydrocephaly or anencephaly, postaxial polydactyly of the upper limbs, and pre- or postaxial polydactyly of the lower limbs. Duplication of the hallux is a common finding.
DISEASE: Defects in KIF7 are the cause of acrocallosal syndrome (ACLS) [MIM:200990]. ACLS is a syndrome that is characterized by postaxial polydactyly, hallux duplication, macrocephaly and absence of the corpus callosum, usually with severe developmental delay.
DISEASE: Defects in KIF7 are the cause of Joubert syndrome type 12 (JBTS12) [MIM:200990]. JBTS12 is a disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy and renal disease.
DISEASE: Defects in KIF7 may be a cause of Pallister-Hall syndrome (PHS) [MIM:146510]. An autosomal dominant disorder characterized by a wide range of clinical manifestations. Clinical features include hypothalamic hamartoma, pituitary dysfunction, central or postaxial polydactyly, and syndactyly. Malformations are frequent in the viscera, e.g. anal atresia, bifid uvula, congenital heart malformations, pulmonary or renal dysplasia.
SIMILARITY: Belongs to the kinesin-like protein family. KIF27 subfamily.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=AAI04045.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAI12272.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAI12274.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAQ88750.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KIF7
Diseases sorted by gene-association score: acrocallosal syndrome* (1697), al-gazali-bakalinova syndrome* (1630), hydrolethalus syndrome 2* (1379), kif7-related joubert syndrome* (500), hydrolethalus syndrome* (272), pallister-hall syndrome* (237), orofaciodigital syndrome vi* (202), bardet-biedl syndrome 1* (75), multiple epiphyseal dysplasia (12), bifid uvula (11), miliary tuberculosis (7), ciliopathy (7), greig cephalopolysyndactyly syndrome (7), carpenter syndrome (6), adenoid hypertrophy (6), anencephaly (6), renal dysplasia (4), bardet-biedl syndrome (4), obesity (1), joubert syndrome 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.08 RPKM in Ovary
Total median expression: 124.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.8093-0.428 Picture PostScript Text
3' UTR -128.30442-0.290 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF16796 - Microtubule binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2XT3 - X-ray MuPIT 4A14 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q2M1P5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed

Biological Process:
GO:0007018 microtubule-based movement
GO:0045879 negative regulation of smoothened signaling pathway
GO:0045880 positive regulation of smoothened signaling pathway

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005929 cilium
GO:0036064 ciliary basal body
GO:0042995 cell projection
GO:0097542 ciliary tip


-  Descriptions from all associated GenBank mRNAs
  AY358384 - Homo sapiens clone DNA47465 EQYK340 (UNQ340) mRNA, complete cds.
BC104044 - Homo sapiens kinesin family member 7, mRNA (cDNA clone MGC:120653 IMAGE:40026959), complete cds.
BC112271 - Homo sapiens kinesin family member 7, mRNA (cDNA clone MGC:138476 IMAGE:8327739), complete cds.
BC112273 - Homo sapiens kinesin family member 7, mRNA (cDNA clone MGC:138478 IMAGE:8327741), complete cds.
BC143461 - Homo sapiens kinesin family member 7, mRNA (cDNA clone MGC:176986 IMAGE:9051969), complete cds.
HQ258672 - Synthetic construct Homo sapiens clone IMAGE:100072702 Unknown protein gene, encodes complete protein.
KJ904233 - Synthetic construct Homo sapiens clone ccsbBroadEn_13627 KIF7 gene, encodes complete protein.
BC040878 - Homo sapiens kinesin family member 7, mRNA (cDNA clone IMAGE:5724416), partial cds.
BC042063 - Homo sapiens hypothetical protein LOC254571, mRNA (cDNA clone IMAGE:5724194), partial cds.
JD223101 - Sequence 204125 from Patent EP1572962.
JD209933 - Sequence 190957 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q2M1P5 (Reactome details) participates in the following event(s):

R-HSA-5610733 KIF7 is recruited to the ciliary tip through interaction with axonemal microtubules
R-HSA-5610787 Hedgehog 'off' state
R-HSA-5358351 Signaling by Hedgehog
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000394412.1, ENST00000394412.2, ENST00000394412.3, ENST00000394412.4, ENST00000394412.5, ENST00000394412.6, ENST00000394412.7, KIF7_HUMAN, NM_198525, Q2M1P5, Q3SXY0, Q6UXE9, Q8IW72, uc318wpw.1, uc318wpw.2, UNQ340/PRO539
UCSC ID: ENST00000394412.8_8
RefSeq Accession: NM_198525.3
Protein: Q2M1P5 (aka KIF7_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene KIF7:
joubert (Joubert Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.