Human Gene KIFC1 (ENST00000428849.7_4) from GENCODE V47lift37
  Description: kinesin family member C1 (from RefSeq NM_002263.4)
Gencode Transcript: ENST00000428849.7_4
Gencode Gene: ENSG00000237649.8_7
Transcript (Including UTRs)
   Position: hg19 chr6:33,359,600-33,377,673 Size: 18,074 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr6:33,359,763-33,377,467 Size: 17,705 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:33,359,600-33,377,673)mRNA (may differ from genome)Protein (673 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KIFC1_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIFC1; AltName: Full=Kinesin-like protein 2; AltName: Full=Kinesin-related protein HSET;
FUNCTION: Minus end-directed microtubule-dependent motor required for bipolar spindle formation. May contribute to movement of early endocytic vesicles.
SUBUNIT: Binds NUBP1 and NUBP2. Interacts with PPP1R42 (By similarity).
SUBCELLULAR LOCATION: Nucleus (By similarity). Cytoplasm, cytoskeleton, centrosome (By similarity). Cytoplasm, cytoskeleton, spindle (By similarity). Early endosome (By similarity). Note=Associated with nucleus during interphase, centrosomes in early and spindle in later mitosis (By similarity).
MISCELLANEOUS: HeLa cells lacking KIFC1 show multipolar mitotic spindles and a defect in chromosome congression and chromosome alignment during mitosis.
SIMILARITY: Belongs to the kinesin-like protein family. NCD subfamily.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=AAH00712.2; Type=Erroneous initiation; Sequence=AAH63567.1; Type=Erroneous initiation; Sequence=AAH73878.1; Type=Erroneous initiation; Sequence=AAH98438.1; Type=Erroneous initiation; Sequence=BAA03509.1; Type=Frameshift; Positions=223, 256;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.51 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 76.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.40163-0.426 Picture PostScript Text
3' UTR -38.00206-0.184 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF16796 - Microtubule binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
90257 - Myosin rod fragments
57997 - Tropomyosin

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2REP - X-ray


ModBase Predicted Comparative 3D Structure on Q9BW19
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
 Gene Details Gene Details Gene Details
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     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003777 microtubule motor activity
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity

Biological Process:
GO:0000070 mitotic sister chromatid segregation
GO:0007018 microtubule-based movement
GO:0007049 cell cycle
GO:0007080 mitotic metaphase plate congression
GO:0007283 spermatogenesis
GO:0051301 cell division
GO:0090307 mitotic spindle assembly

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005769 early endosome
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AJ010479 - Homo sapiens mRNA for kinesin-like protein 2.
JD078472 - Sequence 59496 from Patent EP1572962.
BC000712 - Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:3506669).
BC073878 - Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:3914750).
JD478379 - Sequence 459403 from Patent EP1572962.
BC098438 - Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:3532250).
AK297378 - Homo sapiens cDNA FLJ53841 complete cds, highly similar to Kinesin-like protein KIFC1.
AK303239 - Homo sapiens cDNA FLJ54292 complete cds, highly similar to Kinesin-like protein KIFC1.
BC063567 - Homo sapiens kinesin family member C1, mRNA (cDNA clone IMAGE:4178503).
JD336837 - Sequence 317861 from Patent EP1572962.
BC121041 - Homo sapiens kinesin family member C1, mRNA (cDNA clone MGC:149736 IMAGE:40117894), complete cds.
BC121042 - Homo sapiens kinesin family member C1, mRNA (cDNA clone MGC:149737 IMAGE:40117899), complete cds.
JD153879 - Sequence 134903 from Patent EP1572962.
KJ904496 - Synthetic construct Homo sapiens clone ccsbBroadEn_13890 KIFC1-like gene, encodes complete protein.
D14678 - Homo sapiens HSET mRNA for kinesin-related protein, partial cds.
JD094816 - Sequence 75840 from Patent EP1572962.
JD317849 - Sequence 298873 from Patent EP1572962.
JD473127 - Sequence 454151 from Patent EP1572962.
JD473109 - Sequence 454133 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BW19 (Reactome details) participates in the following event(s):

R-HSA-990478 Kinesin-14 is a dimer
R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-983189 Kinesins
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-109582 Hemostasis
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000428849.1, ENST00000428849.2, ENST00000428849.3, ENST00000428849.4, ENST00000428849.5, ENST00000428849.6, HSET, KIFC1_HUMAN, KNSL2, NM_002263, O60887, Q14834, Q4KMP0, Q5SU09, Q6GMS7, Q6P4A5, Q9BW19, Q9UQP7, uc319xuv.1, uc319xuv.2
UCSC ID: ENST00000428849.7_4
RefSeq Accession: NM_002263.4
Protein: Q9BW19 (aka KIFC1_HUMAN or KFC1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.