Human Gene KLF8 (ENST00000468660.6_4) from GENCODE V47lift37
  Description: Kruppel like factor 8, transcript variant 1 (from RefSeq NM_007250.5)
Gencode Transcript: ENST00000468660.6_4
Gencode Gene: ENSG00000102349.18_8
Transcript (Including UTRs)
   Position: hg19 chrX:56,258,789-56,317,964 Size: 59,176 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chrX:56,259,768-56,310,927 Size: 51,160 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:56,258,789-56,317,964)mRNA (may differ from genome)Protein (359 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KLF8_HUMAN
DESCRIPTION: RecName: Full=Krueppel-like factor 8; AltName: Full=Basic krueppel-like factor 3; AltName: Full=Zinc finger protein 741;
FUNCTION: Transcriptional repressor and activator. Binds to CACCC- boxes promoter elements. Also binds the GT-box of cyclin D1 promoter and mediates cell cycle progression at G(1) phase as a downstream target of focal adhesion kinase (FAK).
SUBUNIT: Interacts with corepressor CtBP2. Interacts with PIAS1, PIAS2, AND PIAS4; the interaction with each ligase sumoylates KLF8.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Ubiquitous.
PTM: Sumoylation at Lys-67 represses transcriptional activity and reduces cell cycle progression into the G(1) phase. Has no effect on subcellular location.
SIMILARITY: Belongs to the Sp1 C2H2-type zinc-finger protein family.
SIMILARITY: Contains 3 C2H2-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.68 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 230.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -390.90979-0.399 Picture PostScript Text
3' UTR -2074.007037-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type

SCOP Domains:
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on O95600
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005829 cytosol
GO:0016235 aggresome


-  Descriptions from all associated GenBank mRNAs
  BC063276 - Homo sapiens cDNA clone IMAGE:30344932, partial cds.
AK296156 - Homo sapiens cDNA FLJ56495 complete cds, highly similar to Krueppel-like factor 8.
BX641066 - Homo sapiens mRNA; cDNA DKFZp686O08126 (from clone DKFZp686O08126).
U28282 - Human zinc finger protein (ZNF741) mRNA, complete cds.
JD408682 - Sequence 389706 from Patent EP1572962.
JD308502 - Sequence 289526 from Patent EP1572962.
BC105130 - Homo sapiens Kruppel-like factor 8, mRNA (cDNA clone MGC:132790 IMAGE:8144133), complete cds.
BC112109 - Homo sapiens Kruppel-like factor 8, mRNA (cDNA clone MGC:138314 IMAGE:8327577), complete cds.
AB209004 - Homo sapiens premature mRNA for hypothetical protein DKFZp686O08126 variant.
LF382883 - JP 2014500723-A/190386: Polycomb-Associated Non-Coding RNAs.
BC031355 - Homo sapiens Kruppel-like factor 8, mRNA (cDNA clone MGC:30039 IMAGE:4800675), complete cds.
HF546207 - Homo sapiens mRNA for Kruppel-like factor 8, splice variant 1 (KLF8 gene).
HF546208 - Homo sapiens mRNA for Kruppel-like factor 8, splice variant 2 (KLF8 gene).
HF546209 - Homo sapiens mRNA for Kruppel-like factor 8, splice variant 3 (KLF8 gene).
LF382884 - JP 2014500723-A/190387: Polycomb-Associated Non-Coding RNAs.
JD316380 - Sequence 297404 from Patent EP1572962.
AB528991 - Synthetic construct DNA, clone: pF1KE0926, Homo sapiens KLF8 gene for Kruppel-like factor 8, without stop codon, in Flexi system.
EU446774 - Synthetic construct Homo sapiens clone IMAGE:100070044; IMAGE:100011983; FLH257161.01L Kruppel-like factor 8 (KLF8) gene, encodes complete protein.
LF382893 - JP 2014500723-A/190396: Polycomb-Associated Non-Coding RNAs.
LF382894 - JP 2014500723-A/190397: Polycomb-Associated Non-Coding RNAs.
JD228458 - Sequence 209482 from Patent EP1572962.
JD342523 - Sequence 323547 from Patent EP1572962.
LF382896 - JP 2014500723-A/190399: Polycomb-Associated Non-Coding RNAs.
JD245628 - Sequence 226652 from Patent EP1572962.
JD248091 - Sequence 229115 from Patent EP1572962.
LF382897 - JP 2014500723-A/190400: Polycomb-Associated Non-Coding RNAs.
LF382898 - JP 2014500723-A/190401: Polycomb-Associated Non-Coding RNAs.
LF382899 - JP 2014500723-A/190402: Polycomb-Associated Non-Coding RNAs.
LF382900 - JP 2014500723-A/190403: Polycomb-Associated Non-Coding RNAs.
LF382901 - JP 2014500723-A/190404: Polycomb-Associated Non-Coding RNAs.
LF382902 - JP 2014500723-A/190405: Polycomb-Associated Non-Coding RNAs.
JD264622 - Sequence 245646 from Patent EP1572962.
AK054627 - Homo sapiens cDNA FLJ30065 fis, clone ADRGL2000328.
LF382903 - JP 2014500723-A/190406: Polycomb-Associated Non-Coding RNAs.
JD167615 - Sequence 148639 from Patent EP1572962.
JD481190 - Sequence 462214 from Patent EP1572962.
JD481191 - Sequence 462215 from Patent EP1572962.
JD481192 - Sequence 462216 from Patent EP1572962.
JD179281 - Sequence 160305 from Patent EP1572962.
LF382904 - JP 2014500723-A/190407: Polycomb-Associated Non-Coding RNAs.
MA618460 - JP 2018138019-A/190386: Polycomb-Associated Non-Coding RNAs.
MA618461 - JP 2018138019-A/190387: Polycomb-Associated Non-Coding RNAs.
MA618470 - JP 2018138019-A/190396: Polycomb-Associated Non-Coding RNAs.
MA618471 - JP 2018138019-A/190397: Polycomb-Associated Non-Coding RNAs.
MA618473 - JP 2018138019-A/190399: Polycomb-Associated Non-Coding RNAs.
MA618474 - JP 2018138019-A/190400: Polycomb-Associated Non-Coding RNAs.
MA618475 - JP 2018138019-A/190401: Polycomb-Associated Non-Coding RNAs.
MA618476 - JP 2018138019-A/190402: Polycomb-Associated Non-Coding RNAs.
MA618477 - JP 2018138019-A/190403: Polycomb-Associated Non-Coding RNAs.
MA618478 - JP 2018138019-A/190404: Polycomb-Associated Non-Coding RNAs.
MA618479 - JP 2018138019-A/190405: Polycomb-Associated Non-Coding RNAs.
MA618480 - JP 2018138019-A/190406: Polycomb-Associated Non-Coding RNAs.
MA618481 - JP 2018138019-A/190407: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DJN3, BKLF3, E7EQQ8, ENST00000468660.1, ENST00000468660.2, ENST00000468660.3, ENST00000468660.4, ENST00000468660.5, KLF8_HUMAN, L0R3U8, L0R4U2, NM_007250, O95600, Q2M246, Q59GV5, Q5HYQ5, Q5JXP7, Q6MZJ7, Q9UGC4, uc321ljl.1, uc321ljl.2, ZNF741
UCSC ID: ENST00000468660.6_4
RefSeq Accession: NM_007250.5
Protein: O95600 (aka KLF8_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.