Human Gene KPNA6 (ENST00000373625.8_4) from GENCODE V47lift37
  Description: karyopherin subunit alpha 6 (from RefSeq NM_012316.5)
Gencode Transcript: ENST00000373625.8_4
Gencode Gene: ENSG00000025800.14_9
Transcript (Including UTRs)
   Position: hg19 chr1:32,573,657-32,642,164 Size: 68,508 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr1:32,573,732-32,636,495 Size: 62,764 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:32,573,657-32,642,164)mRNA (may differ from genome)Protein (536 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IMA7_HUMAN
DESCRIPTION: RecName: Full=Importin subunit alpha-7; AltName: Full=Karyopherin subunit alpha-6;
FUNCTION: Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran- dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.
SUBUNIT: Interacts with ZIC3 (By similarity). Forms a complex with importin subunit beta-1.
TISSUE SPECIFICITY: Widely expressed.
SIMILARITY: Belongs to the importin alpha family.
SIMILARITY: Contains 10 ARM repeats.
SIMILARITY: Contains 1 IBB domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KPNA6
Diseases sorted by gene-association score: lennox-gastaut syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.77 RPKM in Testis
Total median expression: 591.91 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.6075-0.275 Picture PostScript Text
3' UTR -1818.305669-0.321 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR000225 - Armadillo
IPR002652 - Importin-a_IBB
IPR024931 - Importing_su_alpha

Pfam Domains:
PF00514 - Armadillo/beta-catenin-like repeat
PF01749 - Importin beta binding domain
PF13513 - HEAT-like repeat
PF13646 - HEAT repeats
PF16186 - Atypical Arm repeat

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
53850 - Periplasmic binding protein-like II

ModBase Predicted Comparative 3D Structure on O60684
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
Gene SorterGene Sorter Gene Sorter Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008139 nuclear localization sequence binding
GO:0008565 protein transporter activity
GO:0061608 nuclear import signal receptor activity

Biological Process:
GO:0006606 protein import into nucleus
GO:0006607 NLS-bearing protein import into nucleus
GO:0015031 protein transport
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0060135 maternal process involved in female pregnancy

Cellular Component:
GO:0005634 nucleus
GO:0005643 nuclear pore
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AK002111 - Homo sapiens cDNA FLJ11249 fis, clone PLACE1008790, highly similar to Homo sapiens importin alpha 7 subunit mRNA.
AK128609 - Homo sapiens cDNA FLJ46768 fis, clone TRACH3025316, highly similar to Importin alpha-6 subunit.
BC020520 - Homo sapiens karyopherin alpha 6 (importin alpha 7), mRNA (cDNA clone MGC:17918 IMAGE:3913864), complete cds.
AK295615 - Homo sapiens cDNA FLJ53998 complete cds, highly similar to Importin alpha-7 subunit.
AB621806 - Homo sapiens KPNA6 mRNA for importin subunit alpha-7, partial cds, clone: HP05840-RBd34F06.
AK315490 - Homo sapiens cDNA, FLJ96553, Homo sapiens karyopherin alpha 6 (importin alpha 7) (KPNA6), mRNA.
JD038687 - Sequence 19711 from Patent EP1572962.
AF060543 - Homo sapiens importin alpha 7 subunit mRNA, complete cds.
AK301714 - Homo sapiens cDNA FLJ53229 complete cds, highly similar to Importin alpha-7 subunit.
AB527261 - Synthetic construct DNA, clone: pF1KB5672, Homo sapiens KPNA6 gene for karyopherin alpha 6, without stop codon, in Flexi system.
DQ894781 - Synthetic construct Homo sapiens clone IMAGE:100009241; FLH178379.01L; RZPDo839C07127D karyopherin alpha 6 (importin alpha 7) (KPNA6) gene, encodes complete protein.
BT009843 - Homo sapiens karyopherin alpha 6 (importin alpha 7) mRNA, complete cds.
DQ891587 - Synthetic construct clone IMAGE:100004217; FLH178383.01X; RZPDo839C07128D karyopherin alpha 6 (importin alpha 7) (KPNA6) gene, encodes complete protein.
KJ893420 - Synthetic construct Homo sapiens clone ccsbBroadEn_02814 KPNA6 gene, encodes complete protein.
DQ594843 - Homo sapiens piRNA piR-60955, complete sequence.
JD116462 - Sequence 97486 from Patent EP1572962.
JD350024 - Sequence 331048 from Patent EP1572962.
JD536690 - Sequence 517714 from Patent EP1572962.
JD384088 - Sequence 365112 from Patent EP1572962.
JD445877 - Sequence 426901 from Patent EP1572962.
JD320129 - Sequence 301153 from Patent EP1572962.
JD320212 - Sequence 301236 from Patent EP1572962.
JD189280 - Sequence 170304 from Patent EP1572962.
JD099646 - Sequence 80670 from Patent EP1572962.
JD154062 - Sequence 135086 from Patent EP1572962.
JD158174 - Sequence 139198 from Patent EP1572962.
JD215298 - Sequence 196322 from Patent EP1572962.
JD344109 - Sequence 325133 from Patent EP1572962.
JD160167 - Sequence 141191 from Patent EP1572962.
JD344976 - Sequence 326000 from Patent EP1572962.
JD269163 - Sequence 250187 from Patent EP1572962.
JD049113 - Sequence 30137 from Patent EP1572962.
JD078658 - Sequence 59682 from Patent EP1572962.
JD167388 - Sequence 148412 from Patent EP1572962.
JD546431 - Sequence 527455 from Patent EP1572962.
JD182169 - Sequence 163193 from Patent EP1572962.
JD221447 - Sequence 202471 from Patent EP1572962.
JD348524 - Sequence 329548 from Patent EP1572962.
JD556696 - Sequence 537720 from Patent EP1572962.
JD234559 - Sequence 215583 from Patent EP1572962.
JD359260 - Sequence 340284 from Patent EP1572962.
DQ577631 - Homo sapiens piRNA piR-45743, complete sequence.
JD106538 - Sequence 87562 from Patent EP1572962.
JD155374 - Sequence 136398 from Patent EP1572962.
JD355573 - Sequence 336597 from Patent EP1572962.
DL491724 - Novel nucleic acids.
JD423412 - Sequence 404436 from Patent EP1572962.
JD325921 - Sequence 306945 from Patent EP1572962.
DQ578138 - Homo sapiens piRNA piR-46250, complete sequence.
JD256318 - Sequence 237342 from Patent EP1572962.
JD040457 - Sequence 21481 from Patent EP1572962.
DL490304 - Novel nucleic acids.
JD059465 - Sequence 40489 from Patent EP1572962.
JD267335 - Sequence 248359 from Patent EP1572962.
JD200431 - Sequence 181455 from Patent EP1572962.
JD356819 - Sequence 337843 from Patent EP1572962.
JD469384 - Sequence 450408 from Patent EP1572962.
JD338451 - Sequence 319475 from Patent EP1572962.
JD400023 - Sequence 381047 from Patent EP1572962.
JD463997 - Sequence 445021 from Patent EP1572962.
JD196913 - Sequence 177937 from Patent EP1572962.
JD147755 - Sequence 128779 from Patent EP1572962.
JD302805 - Sequence 283829 from Patent EP1572962.
JD085803 - Sequence 66827 from Patent EP1572962.
JD550636 - Sequence 531660 from Patent EP1572962.
JD180502 - Sequence 161526 from Patent EP1572962.
JD372262 - Sequence 353286 from Patent EP1572962.
JD355729 - Sequence 336753 from Patent EP1572962.
JD363213 - Sequence 344237 from Patent EP1572962.
AK000724 - Homo sapiens cDNA FLJ20717 fis, clone HEP18380.
JD430397 - Sequence 411421 from Patent EP1572962.
JD557501 - Sequence 538525 from Patent EP1572962.
JD564098 - Sequence 545122 from Patent EP1572962.
JD557502 - Sequence 538526 from Patent EP1572962.
JD529575 - Sequence 510599 from Patent EP1572962.
JD529576 - Sequence 510600 from Patent EP1572962.
JD169986 - Sequence 151010 from Patent EP1572962.
JD169988 - Sequence 151012 from Patent EP1572962.
JD117277 - Sequence 98301 from Patent EP1572962.
JD517715 - Sequence 498739 from Patent EP1572962.
JD105956 - Sequence 86980 from Patent EP1572962.
JD038286 - Sequence 19310 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RDC7, D3DPP5, ENST00000373625.1, ENST00000373625.2, ENST00000373625.3, ENST00000373625.4, ENST00000373625.5, ENST00000373625.6, ENST00000373625.7, IMA7_HUMAN, IPOA7, NM_012316, O60684, Q5VVU3, uc318kxw.1, uc318kxw.2
UCSC ID: ENST00000373625.8_4
RefSeq Accession: NM_012316.5
Protein: O60684 (aka IMA7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.