Human Gene KRT2 (ENST00000309680.4_7) from GENCODE V47lift37
  Description: keratin 2 (from RefSeq NM_000423.3)
Gencode Transcript: ENST00000309680.4_7
Gencode Gene: ENSG00000172867.4_9
Transcript (Including UTRs)
   Position: hg19 chr12:53,038,342-53,045,995 Size: 7,654 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr12:53,038,803-53,045,926 Size: 7,124 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:53,038,342-53,045,995)mRNA (may differ from genome)Protein (639 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: K22E_HUMAN
DESCRIPTION: RecName: Full=Keratin, type II cytoskeletal 2 epidermal; AltName: Full=Cytokeratin-2e; Short=CK-2e; AltName: Full=Epithelial keratin-2e; AltName: Full=Keratin-2 epidermis; AltName: Full=Keratin-2e; Short=K2e; AltName: Full=Type-II keratin Kb2;
FUNCTION: Probably contributes to terminal cornification. Associated with keratinocyte activation, proliferation and keratinization.
SUBUNIT: Heterotetramer of two type I and two type II keratins. Associates with KRT10 (By similarity).
TISSUE SPECIFICITY: Expressed in the upper spinous and granular suprabasal layers of normal adult epidermal tissues from most body sites including thigh, breast nipple, foot sole, penile shaft and axilla. Not present in foreskin, squamous metaplasias and carcinomas. Expression in hypertrophic and keloid scars begins in the deepest suprabasal layer. Weakly expressed in normal gingiva and tongue, however expression is induced in benign keratoses of lingual mucosa and in mild-to-moderate oral dysplasia with orthokeratinization.
DEVELOPMENTAL STAGE: Synthesized during maturation of epidermal keratinocytes and localized in the upper intermediate cells of fetal skin. Earliest expression is at 10 weeks in the developing embryo in the presumptive nail bed of developing digits, shifting to the proximal nail fold by 13.5 weeks. At 12.5 weeks, detected in scattered cells of the intermediate layer of trunk skin. At 19.3 weeks, regional expression patterns were observed in upper intermediate keratinocytes of cheek, trunk, dorsal and ventral knee, elbow and dorsal hand. Distal areas around the periumbilical region showed increased number of positive cells and by 15 weeks is expressed in small groups of cells in the fetal hair follicles.
DISEASE: Defects in KRT2 are a cause of ichthyosis bullosa of Siemens (IBS) [MIM:146800]. IBS is a rare autosomal dominant skin disorder displaying a type of epidermolytic hyperkeratosis characterized by generalized erythema and extensive blistering from birth. Large, dark gray hyperkeratoses are observed in later weeks. The skin of IBS patients is unusually fragile and has a tendency to shed the outer layers of the epidermis, producing localized denuded areas (molting effect). IBS usually improves with age so that in most middle-aged patients the hyperkeratosis and keratotic lichenification is limited to the flexural folds of the major joints.
MISCELLANEOUS: There are two types of cytoskeletal and microfibrillar keratin: I (acidic; 40-55 kDa) and II (neutral to basic; 56-70 kDa).
SIMILARITY: Belongs to the intermediate filament family.
WEB RESOURCE: Name=Human Intermediate Filament Mutation Database; URL="http://www.interfil.org";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/KRT2";
WEB RESOURCE: Name=Wikipedia; Note=Keratin-2A entry; URL="http://en.wikipedia.org/wiki/Keratin_2A";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KRT2
Diseases sorted by gene-association score: ichthyosis bullosa of siemens* (1714), exfoliative ichthyosis* (418), ichthyosis (34), epidermolytic hyperkeratosis (21), congenital ichthyosiform erythroderma (10), white sponge nevus 1 (10), pachyonychia congenita 1 (7)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3150.05 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 4086.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.1069-0.233 Picture PostScript Text
3' UTR -133.10461-0.289 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016044 - F
IPR001664 - IF
IPR018039 - Intermediate_filament_CS
IPR003054 - Keratin_II

Pfam Domains:
PF00038 - Intermediate filament protein
PF16208 - Keratin type II head

SCOP Domains:
46579 - Prefoldin
56954 - Outer membrane efflux proteins (OEP)
64593 - Intermediate filament protein, coiled coil region
90257 - Myosin rod fragments
57997 - Tropomyosin
161270 - PspA lactotransferrin-binding region

ModBase Predicted Comparative 3D Structure on P35908
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005198 structural molecule activity
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0008092 cytoskeletal protein binding
GO:0030280 structural constituent of epidermis

Biological Process:
GO:0003334 keratinocyte development
GO:0008544 epidermis development
GO:0018149 peptide cross-linking
GO:0031424 keratinization
GO:0032980 keratinocyte activation
GO:0043616 keratinocyte proliferation
GO:0045109 intermediate filament organization
GO:0045684 positive regulation of epidermis development
GO:0051546 keratinocyte migration
GO:0070268 cornification

Cellular Component:
GO:0001533 cornified envelope
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0016020 membrane
GO:0045095 keratin filament
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  M99061 - Homo sapiens epidermal cytokeratin 2 mRNA, complete cds.
JD273815 - Sequence 254839 from Patent EP1572962.
BC096294 - Homo sapiens keratin 2, mRNA (cDNA clone MGC:116966 IMAGE:40007308), complete cds.
BC099643 - Homo sapiens keratin 2, mRNA (cDNA clone MGC:116967 IMAGE:40007309), complete cds.
BC099644 - Homo sapiens keratin 2, mRNA (cDNA clone MGC:116968 IMAGE:40007310), complete cds.
JD275075 - Sequence 256099 from Patent EP1572962.
KJ891522 - Synthetic construct Homo sapiens clone ccsbBroadEn_00916 KRT2 gene, encodes complete protein.
KR711795 - Synthetic construct Homo sapiens clone CCSBHm_00030959 KRT2 (KRT2) mRNA, encodes complete protein.
KR711796 - Synthetic construct Homo sapiens clone CCSBHm_00030963 KRT2 (KRT2) mRNA, encodes complete protein.
KR711797 - Synthetic construct Homo sapiens clone CCSBHm_00030966 KRT2 (KRT2) mRNA, encodes complete protein.
KR711798 - Synthetic construct Homo sapiens clone CCSBHm_00030968 KRT2 (KRT2) mRNA, encodes complete protein.
KR712239 - Synthetic construct Homo sapiens clone CCSBHm_00900198 KRT2 (KRT2) mRNA, encodes complete protein.
JD178401 - Sequence 159425 from Patent EP1572962.
JD254010 - Sequence 235034 from Patent EP1572962.
JD071282 - Sequence 52306 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P35908 (Reactome details) participates in the following event(s):

R-HSA-6805546 Keratin type I binds keratin type II
R-HSA-6805573 Keratin type I/type II heterodimers form tetramers
R-HSA-6806613 Keratin tetramers bind to form unit length filaments
R-HSA-6805567 Keratinization
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000309680.1, ENST00000309680.2, ENST00000309680.3, K22E_HUMAN, KRT2A, KRT2E, NM_000423, P35908, Q4VAQ2, uc317oos.1, uc317oos.2
UCSC ID: ENST00000309680.4_7
RefSeq Accession: NM_000423.3
Protein: P35908 (aka K22E_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.