Human Gene KRT85 (ENST00000257901.7_7) from GENCODE V47lift37
  Description: keratin 85, transcript variant 1 (from RefSeq NM_002283.4)
Gencode Transcript: ENST00000257901.7_7
Gencode Gene: ENSG00000135443.8_8
Transcript (Including UTRs)
   Position: hg19 chr12:52,753,790-52,761,265 Size: 7,476 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr12:52,754,637-52,761,189 Size: 6,553 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:52,753,790-52,761,265)mRNA (may differ from genome)Protein (507 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KRT85_HUMAN
DESCRIPTION: RecName: Full=Keratin, type II cuticular Hb5; AltName: Full=Hair keratin K2.12; AltName: Full=Keratin-85; Short=K85; AltName: Full=Type II hair keratin Hb5; AltName: Full=Type-II keratin Kb25;
SUBUNIT: Heterotetramer of two type I and two type II keratins.
TISSUE SPECIFICITY: Synthesis occurs immediately above a small population of matrix cells at the base of the hair bulb and the trichocytes lining the dermal papilla and extends upward through the matrix and ends in the lower part of the cortex of the hair shaft.
DISEASE: Defects in KRT85 are the cause of ectodermal dysplasia pure hair-nail type (EDPHN) [MIM:602032]. Ectodermal dysplasia defines a heterogeneous group of disorders due to abnormal development of two or more ectodermal structures. EDPHN is characterized by complete alopecia, hypotricosis and nail dystrophy in all digits. There is no evidence of any other abnormality. Inheritance can be autosomal dominant or recessive.
MISCELLANEOUS: There are two types of hair/microfibrillar keratin, I (acidic) and II (neutral to basic).
SIMILARITY: Belongs to the intermediate filament family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KRT85
Diseases sorted by gene-association score: ectodermal dysplasia 4, hair/nail type* (1680), hair disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.86 RPKM in Testis
Total median expression: 1.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.3076-0.162 Picture PostScript Text
3' UTR -287.00847-0.339 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016044 - F
IPR001664 - IF
IPR018039 - Intermediate_filament_CS
IPR003054 - Keratin_II

Pfam Domains:
PF00038 - Intermediate filament protein
PF16208 - Keratin type II head

SCOP Domains:
140570 - MukF C-terminal domain-like
101082 - Typo IV secretion system protein TraC
57184 - Growth factor receptor domain
64593 - Intermediate filament protein, coiled coil region

ModBase Predicted Comparative 3D Structure on P78386
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005198 structural molecule activity

Biological Process:
GO:0008544 epidermis development
GO:0031424 keratinization
GO:0070268 cornification

Cellular Component:
GO:0005615 extracellular space
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0045095 keratin filament


-  Descriptions from all associated GenBank mRNAs
  X99140 - H.sapiens mRNA for hair keratin, hHb5.
JD527060 - Sequence 508084 from Patent EP1572962.
JD422981 - Sequence 404005 from Patent EP1572962.
JD273545 - Sequence 254569 from Patent EP1572962.
JD091090 - Sequence 72114 from Patent EP1572962.
JD123610 - Sequence 104634 from Patent EP1572962.
JD171460 - Sequence 152484 from Patent EP1572962.
JD461410 - Sequence 442434 from Patent EP1572962.
JD492486 - Sequence 473510 from Patent EP1572962.
JD487122 - Sequence 468146 from Patent EP1572962.
JD387802 - Sequence 368826 from Patent EP1572962.
JD295612 - Sequence 276636 from Patent EP1572962.
AK302303 - Homo sapiens cDNA FLJ51392 complete cds, highly similar to Keratin, type II cuticular Hb5.
JD240193 - Sequence 221217 from Patent EP1572962.
JD399375 - Sequence 380399 from Patent EP1572962.
JD504881 - Sequence 485905 from Patent EP1572962.
JD283923 - Sequence 264947 from Patent EP1572962.
JD322631 - Sequence 303655 from Patent EP1572962.
JD309529 - Sequence 290553 from Patent EP1572962.
JD422802 - Sequence 403826 from Patent EP1572962.
JD134872 - Sequence 115896 from Patent EP1572962.
JD200960 - Sequence 181984 from Patent EP1572962.
JD384276 - Sequence 365300 from Patent EP1572962.
BC166627 - Synthetic construct Homo sapiens clone IMAGE:100066353, MGC:195490 keratin 85 (KRT85) mRNA, encodes complete protein.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P78386 (Reactome details) participates in the following event(s):

R-HSA-6805546 Keratin type I binds keratin type II
R-HSA-6805573 Keratin type I/type II heterodimers form tetramers
R-HSA-6806613 Keratin tetramers bind to form unit length filaments
R-HSA-6805567 Keratinization
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000257901.1, ENST00000257901.2, ENST00000257901.3, ENST00000257901.4, ENST00000257901.5, ENST00000257901.6, KRT85_HUMAN, KRTHB5, NM_002283, P78386, Q9NSB1, uc317gad.1, uc317gad.2
UCSC ID: ENST00000257901.7_7
RefSeq Accession: NM_002283.4
Protein: P78386 (aka KRT85_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.