Human Gene KRTAP4-16 (ENST00000440582.1_7) from GENCODE V47lift37

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Human Gene KRTAP4-16 (ENST00000440582.1_7) from GENCODE V47lift37

Description: keratin associated protein 4-16 (from RefSeq NM_001396067.1)
Gencode Transcript: ENST00000440582.1_7
Gencode Gene: ENSG00000241241.1_12
Transcript (Including UTRs)
Position: hg19 chr17:39,257,754-39,258,461 Size: 708 Total Exon Count: 1 Strand: -
Coding Region
Position: hg19 chr17:39,257,754-39,258,461 Size: 708 Coding Exon Count: 1

Page Index	Sequence and Links	Primers	Gene Alleles	RNA-Seq Expression	Microarray Expression
Protein Structure	Other Species	GO Annotations	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr17:39,257,754-39,258,461)			mRNA (may differ from genome)		Protein (235 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Table Schema	AlphaFold	BioGPS
Ensembl	ExonPrimer	GeneCards	MGI	PubMed	UniProtKB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 0.00 RPKM in (null) Total median expression: 0.00 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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Protein Domain and Structure Information

InterPro Domains: Graphical view of domain structure
IPR002494 - Keratin-assoc

Pfam Domains:
PF13885 - Keratin, high sulfur B2 protein

ModBase Predicted Comparative 3D Structure on G5E9R7


Front	Top	Side

The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Gene Ontology (GO) Annotations with Structured Vocabulary


	Cellular Component: GO:0005882 intermediate filament GO:0045095 keratin filament

Other Names for This Gene


	Alternate Gene Symbols: G5E9R7, KR416_HUMAN, KRTAP4-16 , KRTAP4-16P , KRTAP4P1 , NM_001396067, uc320isr.1, uc320isr.2 UCSC ID: ENST00000440582.1_7 RefSeq Accession: NM_001396067.1 Protein: G5E9R7

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


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